Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02994 ATGGATGGCAACAACCCTTATAACTCTCCTACAGTTCCACCACCACCTATACAACTTCCAAAAGTAGTAACTTCTACATCTGCACCAACAACTCCTTCATCTTCGACAACCCCGACAGCGACGACCGGTATTGTTGTTGGAAGATACCGTGGAACCAGATGTAGGAGTGGGAAATGGGTATCTGAGATACGTGAGCCGCGTAAGACGAAGCGCATTTGGTTAGGGACATACCCTAAAGCTGAAATGGCAGCAGCTGCTTATGATGTTGCTGCTCTTGCTTTAAAAGGACCTGATACGACTCTTAACTTTCCGGATTCGGTACTTTCTTACCCTATTCCTGCTTCTTTGTCTTCCGCTGATATTCGCGCTGCGGCTGAAGCTGCTGCACAAGCCAAACTCAGGAGAGTGAAACCACCTGATCAACATGAACAAGGAAGACAACAGCAACAGCAAGAAAACGTTTCTGGTTTTGGTTTTGGTGGAAGTTCTTCAGCTAGTACTGGAATGCAACAACAACAACAAAACCCTTCTGGTTTTGGTTTTGAGGAAAGTTCTATAGCTAGTAGTGGAATGCTGCAACAACAACAACAACAACAAGGTTATGAATATATTGATGAGGATGAGTTGTTGAATATGCCGAATTTGTTGGACGATATGGCGAGAGGAATGCAGGTTAGTCCACCAAGGATGACCTCGTTTTCGAATTACTCTTCCGACCATCATTCACCGAGGAATTCTGATGGAGGAGATGATAATCTTTGGAGTTACACTTTTTGA 777 0.4427 MDGNNPYNSPTVPPPPIQLPKVVTSTSAPTTPSSSTTPTATTGIVVGRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPKAEMAAAAYDVAALALKGPDTTLNFPDSVLSYPIPASLSSADIRAAAEAAAQAKLRRVKPPDQHEQGRQQQQQENVSGFGFGGSSSASTGMQQQQQNPSGFGFEESSIASSGMLQQQQQQQGYEYIDEDELLNMPNLLDDMARGMQVSPPRMTSFSNYSSDHHSPRNSDGGDDNLWSYTF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02994 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 33 223 - -
Vifa3g02994 258 MobiDBLite consensus disorder prediction 143 199 - -
Vifa3g02994 258 ProSiteProfiles AP2/ERF domain profile. 48 104 IPR001471 GO:0003700|GO:0006355
Vifa3g02994 258 CDD AP2 48 106 IPR001471 GO:0003700|GO:0006355
Vifa3g02994 258 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Vifa3g02994 258 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Vifa3g02994 258 MobiDBLite consensus disorder prediction 1 43 - -
Vifa3g02994 258 MobiDBLite consensus disorder prediction 130 199 - -
Vifa3g02994 258 MobiDBLite consensus disorder prediction 227 258 - -
Vifa3g02994 258 MobiDBLite consensus disorder prediction 224 258 - -
Vifa3g02994 258 Pfam AP2 domain 53 96 IPR001471 GO:0003700|GO:0006355
Vifa3g02994 258 SMART rav1_2 48 110 IPR001471 GO:0003700|GO:0006355
Vifa3g02994 258 MobiDBLite consensus disorder prediction 21 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02994 Vifa-Chr3 847743201 847743977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02994 49 256 AP2-EREBP Transcription Factor Family AT5G52020 48.558 1.47e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa3g02994 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02994 - - psat:127091780 371.703