Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02992 ATGGATGAACTTGAGAACATATTAGGACATTGGGGAGCACTTGAGGGTTCCAACCCAACTCTCTTCCAAGGGAAAATGAAGGCAATTTTCTGTGGAAATTTTGAATATGATTGTCGGGAGTCTGAGCTGGAGCGGCTTTTTAGACGATATGGAAAGGTTGATAGGGTGGATATGAAGGCCGGATTTGCTTTTATTTATATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGCGCCCTCGATCGGATTGAATTTGGTCGGAAGGGCCGTAGACTCCGTGTAGAATGGACAAAGCAAGAACGTGGTATTCGAAGGCCTGCTGAGCGCCCAAAACGATCTTCACGTGATGGGAGACCATCAAAGACCTTATTTGTAATTAATTTTGATACAACCCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGGAGGAATTTTGCATTTGTTCAGTATGAATCAGAAGATGATGCTTCCAAAGCACTGGAAGCTACAAATATGAGCAAGTTGTTGGATCGGGTTATTTCAGTTGAATTTGCTGCTAGAGATGACGATGTCAGGCGAAATGGACATAGTCCGGAGAGAGGCCGTGATCGTCAGCGTGACAGAAGCCATGATGGAAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTACGGCCATGGGTCTAGTCCATATAAGAGGCAGAGGAGCAGCCCTGATTATGGGCGTGGCAACAGCCGTAGTAGAAGCCCCTATCGAAGAGAGCGAGGTAGCCCTGTTTACGGGCGTCGAAGCATTAGTCCTTACAGAAGAGAGAGGGATGGTTCTGAGCCTGTTCGTGTCAAAAGCCGCAGTCCTTATCACAAAGAGCGGGGGAGAACCAACCGGTCTCCCTCCCATAGTCTCGAAGAAGGAGAGACTCGAAAAGGTCATGAATTTGACCTTAGTCCCGAAGAAGGAGAGAGGACAGACCCTAAGAAAGGCCATGGGTCTGACCATAGTCCCGAAGAGGGAGAGAGGATAGACCCTATAAAAGGTCATCATGAATCTGACAATAGTCCTTATGATGCTCTGAAGGATAGCACTGAAAATGGCCATTACAAGAGGCACAGTCCTGATGCAATAGGGAACCCCAGCCCATACAATGATTCTAGAGGGAGTCCTAGGCCTGATGCAAAAGGGAACTCCAGCTCATACAATGATTATGGAGGGAGCCCAAATACTAGGCCTAAACCCAGGAACAGTCCCAACTGTGGTGGTCCTGAAAGTCCCATTCATGAACAATATCGCAGCCAGAGCCTGTCACCCCCTGCAGAAGAATGA 1347 0.4781 MDELENILGHWGALEGSNPTLFQGKMKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDADAAIRALDRIEFGRKGRRLRVEWTKQERGIRRPAERPKRSSRDGRPSKTLFVINFDTTHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAARDDDVRRNGHSPERGRDRQRDRSHDGRRSPSPYRRERGSPDYGHGSSPYKRQRSSPDYGRGNSRSRSPYRRERGSPVYGRRSISPYRRERDGSEPVRVKSRSPYHKERGRTNRSPSHSLEEGETRKGHEFDLSPEEGERTDPKKGHGSDHSPEEGERIDPIKGHHESDNSPYDALKDSTENGHYKRHSPDAIGNPSPYNDSRGSPRPDAKGNSSSYNDYGGSPNTRPKPRNSPNCGGPESPIHEQYRSQSLSPPAEE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02992 448 SMART rrm1_1 122 188 IPR000504 GO:0003723
Vifa3g02992 448 SMART rrm1_1 28 95 IPR000504 GO:0003723
Vifa3g02992 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 99 IPR000504 GO:0003723
Vifa3g02992 448 Gene3D - 23 107 IPR012677 -
Vifa3g02992 448 MobiDBLite consensus disorder prediction 195 448 - -
Vifa3g02992 448 MobiDBLite consensus disorder prediction 385 422 - -
Vifa3g02992 448 MobiDBLite consensus disorder prediction 255 378 - -
Vifa3g02992 448 FunFam Serine/arginine-rich splicing factor RS31 113 203 - -
Vifa3g02992 448 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 122 360 - -
Vifa3g02992 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 87 IPR000504 GO:0003723
Vifa3g02992 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 185 IPR000504 GO:0003723
Vifa3g02992 448 MobiDBLite consensus disorder prediction 195 232 - -
Vifa3g02992 448 Gene3D - 108 234 IPR012677 -
Vifa3g02992 448 SUPERFAMILY RNA-binding domain, RBD 25 113 IPR035979 GO:0003676
Vifa3g02992 448 SUPERFAMILY RNA-binding domain, RBD 105 199 IPR035979 GO:0003676
Vifa3g02992 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 192 IPR000504 GO:0003723
Vifa3g02992 448 MobiDBLite consensus disorder prediction 239 253 - -
Vifa3g02992 448 FunFam Serine/arginine-rich splicing factor RS31 26 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02992 Vifa-Chr3 846568948 846573641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02992 120 200 Eukaryotic Initiation Factors Gene Family AT1G49760 32.584 1.18e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02992 K12893 - gmx:100796509 564.303