Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02982 ATGGGCTTTCTCCGGCGACTCTTTGGCGCCAAGAAACCGGGTCCTCCCACCGACGGTTCAGGTACCAAATCTGACAAAGACAGCAACAAAAGAAGATGGACCTTCGCAAAACAAAGCAGTAGGAGAAAGTCACTCCCACCACCACCGCCACAACCGCCACCGCCCTCCGCCTTCACTCAATTTGACCCCTCCACTTCCTTAGAACGCAACAAACATGCAATTGCTGTTGCGGCTGCCACTGCAGCCGTCGCCGAGGCAGCTCTCGCCACCGCACATGCCGCTGCGGAGGTTGTCAGACTGACAAGCAACGGCGCGGGAAGTAGCTCCAAAGCGCGTGGTGCCAGCCAGCCACGGTTGCCGGAGGATACCGCCGCCGTTAGAATACAGTCAGCTTTCCGCGGTTACTTGGCGAGGAGGGCGTTGAGAGCGCTAAAAGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCGGATATGCTAAGGCGCATGCAAACATTGGTTCGACTTCAGACGCAAGCACGCGCGACTCGTGCGCACCACTTGTCATCGGATAATTTGCATTCTTTCAAGTCTTCACTTTCTCATTACCCTGTTCCTGAAGAATATGAGGACCCGCACTCACATCGTGTCTGTAGTACGAAATTCGGTGGATCTTCCATCCTCAAGAGATGTAGTTCGAATGCAAATTTTAAGAAGATCGAGTCGGAGAGACAACGGATTGGCTCCAATTGGTTAGACCATTGGATGCAAGATAACTCAGATACTTGGAAGCCACACGAGTCTCCGTCGAAACACTCAACAAAACCTCAAAATCAAACTCCCTCATTCAAGTTTCACAAAGGAAAAGACCAAGAAACAGCATCGCGTACAGCTGATAATAGTCCACAAACATTCTCCACGTCTTTAAAAACCGGAAACAGTGTAAGAAGAGGTAATCCTTTTACACCTACAAGAAGTGAATGTTCATGGAGTTTCTTAGGAGGTTACTCCGGTTACCCTAATTTCATGGCGAACACCGAATCCTCTAGGGCTAAAGTTCGATCGCAAAGTGCACCTAGACAAAGACATGAGTTTGAGGGATACATTTCCTCTAGAAGACCTTTTCAAGGTCTTTGGGAAGTAGGGTCTACTAATTCAGATCAAGATTCTGATTCAAGGAGCAATAGAGTCTCACCATCTTTGAGCCGTTTCAATAGAACTGGAAGTAACAATTTAAGGTGA 1242 0.4863 MGFLRRLFGAKKPGPPTDGSGTKSDKDSNKRRWTFAKQSSRRKSLPPPPPQPPPPSAFTQFDPSTSLERNKHAIAVAAATAAVAEAALATAHAAAEVVRLTSNGAGSSSKARGASQPRLPEDTAAVRIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQTQARATRAHHLSSDNLHSFKSSLSHYPVPEEYEDPHSHRVCSTKFGGSSILKRCSSNANFKKIESERQRIGSNWLDHWMQDNSDTWKPHESPSKHSTKPQNQTPSFKFHKGKDQETASRTADNSPQTFSTSLKTGNSVRRGNPFTPTRSECSWSFLGGYSGYPNFMANTESSRAKVRSQSAPRQRHEFEGYISSRRPFQGLWEVGSTNSDQDSDSRSNRVSPSLSRFNRTGSNNLR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02982 413 PANTHER IQ-DOMAIN 5-RELATED 20 392 - -
Vifa3g02982 413 SMART iq_5 120 142 IPR000048 GO:0005515
Vifa3g02982 413 SMART iq_5 143 164 IPR000048 GO:0005515
Vifa3g02982 413 MobiDBLite consensus disorder prediction 258 321 - -
Vifa3g02982 413 MobiDBLite consensus disorder prediction 1 61 - -
Vifa3g02982 413 Pfam IQ calmodulin-binding motif 145 162 IPR000048 GO:0005515
Vifa3g02982 413 Pfam IQ calmodulin-binding motif 124 142 IPR000048 GO:0005515
Vifa3g02982 413 Gene3D - 121 186 - -
Vifa3g02982 413 MobiDBLite consensus disorder prediction 43 59 - -
Vifa3g02982 413 Pfam Protein of unknown function (DUF4005) 295 385 IPR025064 -
Vifa3g02982 413 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Vifa3g02982 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 166 IPR027417 -
Vifa3g02982 413 MobiDBLite consensus disorder prediction 295 321 - -
Vifa3g02982 413 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Vifa3g02982 413 MobiDBLite consensus disorder prediction 379 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02982 Vifa-Chr3 840633245 840636470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02982 1 391 IQD Protein Family AT5G62070 45.433 1.23e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02982 - - gmx:100783694 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02982 3 840633245 840636470 Vifa3g02982 3 840633245 840636470 ECH
Vifa1g04259 1 658993705 658996722 Vifa3g02982 3 840633245 840636470 PCT