Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02978 ATGAAGATTGAAAGCGATTCTGGCGATCGATCAAGGTTCTTGGAGAATTATGCGGCCGGTTTTCTTCTGAGAATTCAAGAATGGATTTCTGGTCAGACAGCTTTGGGGGAAGCACATAATGGAGAAAACGCCTTTGCTGATTCATTAGAAGCATTTGGAGGAGGCTACGACGACCCTGTTAGTGTATCAGTTGGAGGACCTGTCATATCTAAGTTTATCACTGCACTACGTGAGTTAGCTACTTTTAAAGAGCTTCTTCGCTCACAGGTAGAGCATGTATTGATTGACCGGTTGTCAGAGTTTCTAAATGTTGATTTGCAAAATGCAAAGGAATCTCGTCGTCGTTTTGACAAATCTGTGCAATCGTATGATCAGTCACGAGAAAAGTTTGTTTCTTTGAAGAAGAATACTCCTGAAGATATTGTTGCTGAATTAGAAGAGGGTCTACAAAATTCAAAGTCATCGTTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCGATAAGTGCAATAATGGACGCTCATTTGAGATACTTTAAACTGGGTTATGACTTACTGAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACGTATGCTCAACAATCTAAAGAAGTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGGACACAGACAGAAGTTGAAAATATACCCATGCCAGGTGCTGATGGCACCCATCCTGTAGGTTTGAATTCTTACAAAAGCTTTGAAGCAGGGATGCAGTCTGCAACCAAAGGCGAGATTCAAACAGTTAAGCAAGGCTATCTGTTAAAACGATCATCAAGGATGCGAGGAGATTGGAAAAGAAGGTTTTTTGTACTTGATAACCATGGGAGTTTATATTATTACAGATCAAAAGGACCCAAACCCGCGGGATTTCAGTCATATAATTATAGTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCATAGTAGGGCAGCGTCACTAAATGAGGATATTTTGGGTTCTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGACGCAGAGGATACTGATCTACGACTTTGCTTCCGTATCATTTCTCCCTCAAAAACATATACACTGCAGGCTGAAAATGAAGCTGATAGAATGGACTGGGTAAACAAAATTACTGGAGCTATCACCTCGCTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTATGGTAAATTGCAATTACAAAATAAAAACTCAGCAACTGGTTCTTCCTTGACAAGTCAACAAGAGGATAGTAATAAATCTTTGATGGATGATGTATATTCCAAAGAAGTGGGTAGTGTCTCTAAAATTTTAAGGGGAATTCCTGGGAATGACAAGTGTGCTGAGTGCAGTACTCCTGAACCAGACTGGGCATCTTTAAACCTTGGTATACTGCTGTGTATTGAATGCTCCGGAGTGCATCGCAATCTTGGTGTTCATATCTCAAAGGTGAGATCTATAACGTTAGATGTGAAGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAATTTAGGTACAAATGGTGATTATGTTTAG 1623 0.3974 MKIESDSGDRSRFLENYAAGFLLRIQEWISGQTALGEAHNGENAFADSLEAFGGGYDDPVSVSVGGPVISKFITALRELATFKELLRSQVEHVLIDRLSEFLNVDLQNAKESRRRFDKSVQSYDQSREKFVSLKKNTPEDIVAELEEGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEVANIEQDKLAKRIQEYRTQTEVENIPMPGADGTHPVGLNSYKSFEAGMQSATKGEIQTVKQGYLLKRSSRMRGDWKRRFFVLDNHGSLYYYRSKGPKPAGFQSYNYSRSSEQNSGMFGRFRSRHSRAASLNEDILGSCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNFQFLQQPHYGKLQLQNKNSATGSSLTSQQEDSNKSLMDDVYSKEVGSVSKILRGIPGNDKCAECSTPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFNNLGTNGDYV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02978 540 CDD ArfGap 464 534 - -
Vifa3g02978 540 ProSiteProfiles PH domain profile. 276 410 IPR001849 -
Vifa3g02978 540 Pfam BAR domain of APPL family 42 219 IPR004148 GO:0005515|GO:0005737
Vifa3g02978 540 SUPERFAMILY PH domain-like 276 425 - -
Vifa3g02978 540 CDD BAR_SFC_plant 34 206 IPR035670 -
Vifa3g02978 540 PRINTS HIV Rev interacting protein signature 491 508 IPR001164 GO:0005096
Vifa3g02978 540 PRINTS HIV Rev interacting protein signature 472 491 IPR001164 GO:0005096
Vifa3g02978 540 SMART PH_update 277 412 IPR001849 -
Vifa3g02978 540 Coils Coil 218 238 - -
Vifa3g02978 540 PANTHER CENTAURIN/ARF 33 534 IPR045258 GO:0005096
Vifa3g02978 540 Gene3D - 269 420 IPR011993 -
Vifa3g02978 540 Pfam PH domain 278 409 IPR001849 -
Vifa3g02978 540 SMART 5bar 2 209 IPR004148 GO:0005515|GO:0005737
Vifa3g02978 540 CDD PH_ACAP 279 414 - -
Vifa3g02978 540 SMART arf_gap_3 460 540 IPR001164 GO:0005096
Vifa3g02978 540 Pfam Putative GTPase activating protein for Arf 464 535 IPR001164 GO:0005096
Vifa3g02978 540 Gene3D Arf GTPase activating protein 445 537 IPR038508 -
Vifa3g02978 540 SUPERFAMILY ArfGap/RecO-like zinc finger 462 535 IPR037278 -
Vifa3g02978 540 SUPERFAMILY BAR/IMD domain-like 33 299 IPR027267 -
Vifa3g02978 540 Gene3D Arfaptin homology (AH) domain/BAR domain 13 242 IPR027267 -
Vifa3g02978 540 ProSiteProfiles ARF GTPase-activating proteins domain profile. 460 540 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02978 Vifa-Chr3 837902544 837915594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02978 470 518 C2H2 Transcription Factor Family AT3G07940 67.347 3.13e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02978 K12489 - gmx:100796740 866.3