Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02977 ATGGGTCTACAAAATTCAAAGTCATCATTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCGATAAGTGCAATAATGGACGCTCATTTGAGATACTTTAAACTGGGTTATGACTTACTGAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACGTATGCTCAACAATCTAAAGAAGTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGGACACAGACAGAAGTTGAAAATATACCCATGCCAGGTGCTGATGGCACCCATCCTGTAGGTTTGAATTCTTACAAAAGCTTTGAAGCAGGGATGCAGTCTGCAACCAAAGGCGAGATTCAAACAGTTAAGCAAGGCTATCTGTTAAAACGGTCATCAAGGATGCGAGGAGATTGGAAAAGAAGGTTTTTTGTACTTGATAACCATGGGAGTTTATATTATTACAGATCAAAAGGACCCAAACCCGCGGGATTTCAGTCATATAATTATAGTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCATAGTAGGGCAGCGTCACTAAATGAGGATATTTTGGGTTCTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGACGCAGAGGATACTGATCTACGACTTTGCTTCCGTATCATTTCTCCCTCAAAAACATATACACTGCAGGCTGAAAATGAAGCTGATAGAATGGACTGGGTAAACAAAATTACTGGAGCTATCACCTCGCTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTATGGTAAATTGCAATTACAAAATAAAAACTCAGCAACTGGTTCTTCCTTGACAAGTCAACAAGAGGATAGTAATAAATCTTTGATGGATGATGTATATTCCAAAGAAGTGGGTAGTGTCTCTAAAATTTTAAGGGGAATTCCTGGGAATGACAAGTGTGCTGAGTGCAGTACTCCTGAACCAGACTGGGCATCTTTAAACCTTGGTATACTGCTGTGTATTGAATGCTCCGGAGTGCATCGCAATCTTGGTGTTCATATCTCAAAGGTGAGATCTATAACGTTAGATGTGAAGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAATTTAGGTAATACTTTTTGTAATTCTATTTGGGAGGGCTTGCTTCTGCTTGGTGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCATGTTCCACAGATCCCTCCCAATATAAAGAAAAGTACATCCAAGCAAAGTATGCAGAGAAATCACTAGTCATCCGGGAAGAGGACATACCCGAAAAACCTTCAGTTTCCACAAAAATATGGCAAGCAGTTCAGGCTATAACTGTACGAGAAGTGTATCGCCTTATTGTAACATCAACTTCAAATCCTATAAACACAAAATTTGAAGAGGCGGTTTCCCATGCAGAGACTGAAAATCATCAGCATGATCCTGAAGCCTGTCTGAGGATTAAGGAGGCTAATGAAACAGAGAGTTGTTTCCGCGGTTGGTCTTTATTACACCTAGCATGTCATTCTGGCAGTACATTAATGGTTGAGCTGTTGCTCCAATTCGGCGCTGATATAAACATGCGTGATTATCATGGAAGGACTCCCTTGCACCGTTGCATTTCTAGTGGGAAAAATTCATTGGCTAAGTTTTTACTAAGAAGGGGCGCAAAACCATCAATTAAAGATGCTGGTGGACATACTGCACTTGAAAGAGCAATGGAGTTGGGAGCAATAACTGACGAAGAGCTATTTATCTTGCTTGTTGAATGCTAG 1827 0.4007 MGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEVANIEQDKLAKRIQEYRTQTEVENIPMPGADGTHPVGLNSYKSFEAGMQSATKGEIQTVKQGYLLKRSSRMRGDWKRRFFVLDNHGSLYYYRSKGPKPAGFQSYNYSRSSEQNSGMFGRFRSRHSRAASLNEDILGSCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNFQFLQQPHYGKLQLQNKNSATGSSLTSQQEDSNKSLMDDVYSKEVGSVSKILRGIPGNDKCAECSTPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFNNLGNTFCNSIWEGLLLLGDERVGESNVPLKPCSTDPSQYKEKYIQAKYAEKSLVIREEDIPEKPSVSTKIWQAVQAITVREVYRLIVTSTSNPINTKFEEAVSHAETENHQHDPEACLRIKEANETESCFRGWSLLHLACHSGSTLMVELLLQFGADINMRDYHGRTPLHRCISSGKNSLAKFLLRRGAKPSIKDAGGHTALERAMELGAITDEELFILLVEC 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02977 608 Pfam Ankyrin repeats (3 copies) 509 580 IPR002110 GO:0005515
Vifa3g02977 608 Pfam PH domain 132 263 IPR001849 -
Vifa3g02977 608 Gene3D Arfaptin homology (AH) domain/BAR domain 2 96 IPR027267 -
Vifa3g02977 608 ProSiteProfiles Ankyrin repeat region circular profile. 549 580 - -
Vifa3g02977 608 Coils Coil 72 92 - -
Vifa3g02977 608 SUPERFAMILY BAR/IMD domain-like 3 153 IPR027267 -
Vifa3g02977 608 CDD ArfGap 318 433 - -
Vifa3g02977 608 ProSiteProfiles Ankyrin repeat profile. 516 548 IPR002110 GO:0005515
Vifa3g02977 608 SUPERFAMILY Ankyrin repeat 503 607 IPR036770 -
Vifa3g02977 608 ProSiteProfiles ARF GTPase-activating proteins domain profile. 314 446 IPR001164 GO:0005096
Vifa3g02977 608 SUPERFAMILY ArfGap/RecO-like zinc finger 316 439 IPR037278 -
Vifa3g02977 608 PANTHER CENTAURIN/ARF 3 606 IPR045258 GO:0005096
Vifa3g02977 608 ProSiteProfiles Ankyrin repeat region circular profile. 516 547 - -
Vifa3g02977 608 SMART arf_gap_3 314 446 IPR001164 GO:0005096
Vifa3g02977 608 Pfam BAR domain of APPL family 3 73 IPR004148 GO:0005515|GO:0005737
Vifa3g02977 608 Pfam Putative GTPase activating protein for Arf 318 439 IPR001164 GO:0005096
Vifa3g02977 608 ProSiteProfiles PH domain profile. 130 264 IPR001849 -
Vifa3g02977 608 CDD PH_ACAP 133 268 - -
Vifa3g02977 608 SUPERFAMILY PH domain-like 130 279 - -
Vifa3g02977 608 PRINTS HIV Rev interacting protein signature 345 362 IPR001164 GO:0005096
Vifa3g02977 608 PRINTS HIV Rev interacting protein signature 368 389 IPR001164 GO:0005096
Vifa3g02977 608 PRINTS HIV Rev interacting protein signature 326 345 IPR001164 GO:0005096
Vifa3g02977 608 Gene3D - 450 599 IPR036770 -
Vifa3g02977 608 Gene3D Arf GTPase activating protein 294 446 IPR038508 -
Vifa3g02977 608 SMART ANK_2a 549 578 IPR002110 GO:0005515
Vifa3g02977 608 SMART ANK_2a 516 545 IPR002110 GO:0005515
Vifa3g02977 608 SMART PH_update 131 266 IPR001849 -
Vifa3g02977 608 Gene3D - 123 274 IPR011993 -
Vifa3g02977 608 ProSiteProfiles Ankyrin repeat profile. 549 581 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02977 Vifa-Chr3 837861893 837868029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02977 324 435 C2H2 Transcription Factor Family AT3G07940 42.478 6.13e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02977 K12489 - gmx:100796740 1031.94