Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02976 ATGAGGGAGGATGAGTATGAAAGCCGGTCCGGAAGTGATAACTTTGAACTCGATGGAATGTCTGGTGATGAACAAGATGGCGGTGATGATCAGCGTAAGAGGAAGAAGAGATACCATAGACACACTCCTAATCAAATTCAAGAGCTTGAAAGTTTCTTCAAAGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGGATCTTAGTAGGAGACTTGGCTTGGAAAATAAACAAGTCAAGTTCTGGTTTCAGAATCGGCGAACACAAATGAAGACTCAACTCGAAAGACATGAGAACATAATGCTTAGGCAGGAAAATGACAAGCTAAGAGGGGAGAATAATATAATGAAAGACGCAATGGTAAATCCAATATGTAACAACTGTGGTGGACCAGCGATTCCCGGGCAGATTTTGTTTGAAGAGCACCAGATTAGAATCGAAAATGCCCGTCTAAAGGATGAATTGAACCGTATATGTGCCTTAACAAACAAGTTCCTTGGCAAACCAATATCATCAATGGCTAATCCCATGGCTCTATCGGCCTCAAATTCAGGTCTGGAACTTGGTATTGGAAGGAATGGTTATGGTGGTGGTTCGAGCTCTCTTGGCCCGTCTTTACCAATGGGGCTTGATCTTGGAGATTGTTCTGCAATGCCTGGTATTAGATCGCCAATGGGAATGATGGGAAATAGTAATGACATTCAGCTTGAGAGATCGGTGCTTATAGATCTTGCATTAGCTGCTATGGATGAACTATTAAAGATGGCTCATGCAGATTGTCCTATTTGGATTAAGGGTTTGGACGGAGAGAGGGACATTTTGAATCAAGAAGAGTATGCAAGGTTTTCTTCTTGCATTGGTCCGAAACCTCCTGGTTTTGTCGCTGAAGCTACGAGAGAAACCGGCATTGTAATAATCAATAGTTCAGCCCTTATGGAAACTTTGATGGACTCTAATCGATATGCAGACATGTTTCAGTCTATGATTGCTAGATCCGTAAACCTTGATGTTTTATCTGGTGGCATTGGTGGAACTAGAAATGGTGCTATACATTTGATGCATGCTGAGGTTCAATTACTTTCACCATTAGTGCCGGTTCGTCAAGTGAGAATACTTCGCTTCTGTAAGCAACATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTGTAGAGATGGGTCATGATGCTAATTCTCAACCATTCATTAGCTGTAGGAGACTTCCTTCAGGATGTATTGTGCAGGATATGCCAAATGGTTATTCCAAGGTAACTTGGATTGAACATTGGGAGTATGATGAGAGTGTTGTTCATCAACTCTATCGTCCGTTGCTTATTTCCGGTATTGGATTCGGTGCTCATAGATGGATCGCTACTCTCCAAAGGCAGTGTGAAGGTTTGGCTATCCTCCTCTCGTCGTCCATCTCAAGTGACGATCACACAGCACTGAGCCAAGCTGGTAGAAGAAGCATGTTGAAGCTCGCACAGCGCATGACGAATAATTTTTGTTCCGGGGTTTGTGCTTCTTCTGCGAGGAAGTGGGACAGCCTTCAAATGGGGACCCTGAGTGACGACATGAGAGTTATGACTAGGAAAAATGTTGATGACCCTGGCGAGCCTCCCGGTATTGTGCTCAGCGCTGCAACGTCTGTTTGGATGCCTGTTTCACGACAAAGATTATTTGATTTTCTGCGTGATGAACGACTTAGAAGCGAGTGGGACATTTTGTCAAACGGTGGACCAATGCAAGAAATGGTTCACATTGCCAAAGGTCAAGGACAAGGAAATTGTGTTTCTCTCCTTCGTGCTAATGCCGTTAATGCAAACGATAGCAGCATGTTGATTTTGCAAGAGACATGGATGGATACATCGTGTTCCGTGGTGGTGTATGCACCGGTTGACGCACAATCATTGAATGTGGTAATGAGCGGTGGTGATTCTGCGTATGTTGCACTCTTGCCTTCAGGTTTTGCCATTGTTCCTGATGGCAATAATTCCTCTAGCTATGGTGCATCAAATGAAACTTCACAAAAAGGCGGTGGAGGCGACAATGGTGGAAGTTTGCTAACAGTCGGGTTCCAAATTCTAGTCAATAGTCTTCCAACTGCAAAACTCACAATGGAATCGGTGGACACCGTGAATAATCTCATCTCATGCACCATTCAGAAGATCAAAGCCGCACTTAGAGTTGCATAA 2190 0.4379 MREDEYESRSGSDNFELDGMSGDEQDGGDDQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSRRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENNIMKDAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSMANPMALSASNSGLELGIGRNGYGGGSSSLGPSLPMGLDLGDCSAMPGIRSPMGMMGNSNDIQLERSVLIDLALAAMDELLKMAHADCPIWIKGLDGERDILNQEEYARFSSCIGPKPPGFVAEATRETGIVIINSSALMETLMDSNRYADMFQSMIARSVNLDVLSGGIGGTRNGAIHLMHAEVQLLSPLVPVRQVRILRFCKQHAEGVWAVVDVSVEMGHDANSQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHQLYRPLLISGIGFGAHRWIATLQRQCEGLAILLSSSISSDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDAQSLNVVMSGGDSAYVALLPSGFAIVPDGNNSSSYGASNETSQKGGGGDNGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02976 729 Pfam START domain 243 463 IPR002913 GO:0008289
Vifa3g02976 729 FunFam Homeobox-leucine zipper protein HDG1 21 108 - -
Vifa3g02976 729 SMART START_1 242 464 IPR002913 GO:0008289
Vifa3g02976 729 MobiDBLite consensus disorder prediction 1 46 - -
Vifa3g02976 729 SUPERFAMILY Bet v1-like 236 464 - -
Vifa3g02976 729 Gene3D - 280 457 IPR023393 -
Vifa3g02976 729 Gene3D - 22 107 - -
Vifa3g02976 729 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Vifa3g02976 729 CDD START_ArGLABRA2_like 237 463 - -
Vifa3g02976 729 CDD homeodomain 34 92 IPR001356 GO:0003677
Vifa3g02976 729 Coils Coil 86 106 - -
Vifa3g02976 729 Pfam Homeodomain 35 90 IPR001356 GO:0003677
Vifa3g02976 729 ProSiteProfiles START domain profile. 233 467 IPR002913 GO:0008289
Vifa3g02976 729 SMART HOX_1 33 96 IPR001356 GO:0003677
Vifa3g02976 729 SUPERFAMILY Bet v1-like 491 723 - -
Vifa3g02976 729 SUPERFAMILY Homeodomain-like 20 92 IPR009057 -
Vifa3g02976 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 32 726 IPR042160 -
Vifa3g02976 729 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02976 Vifa-Chr3 836901673 836905771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02976 2 726 Homeobox Transcription Factor Family AT3G61150 62.144 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa3g02976 START 1e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02976 K09338 - gmx:100794400 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05901 1 924742511 924746476 Vifa3g02976 3 836901673 836905771 ECH
Vifa3g02976 3 836901673 836905771 Vifa3g02976 3 836901673 836905771 ECH