Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02968 ATGGCTCCATCGGTGGAACACAATGGCGACTCCTCAACCGGCGACTCTCAACGATTAACTCCGACGCCGTTTATCTCCAAGACATACCAGATCGTCGACGACCGCGCCATCGACGACGTCGTTTCGTGGAATGATACTGGAACGTCGTTCGTCGTTTGGAACCCTACCGTTTTCGCGAGGGATTTGCTTCCTAAGTATTTCAAGCACAATAATTTCTCCAGCTTCGTTCGGCAACTCAATACTTATGGATTTAAAAAAGTTGTGCCTGATCGGTGGGAATTCTCTAACGAATTCTTTCGAAGAGGTGAGAAACGCCTTCTATGTGATATTCAGCGACGGAAGATCCTTTCAAAATCGCCGTCGGCGGTTACCAATGGCAGTGCAACCGCGACAGTAGCGGTGGTGTCATCTCCTTTGCATTCTGCAAAGCCGGTTGTATCACCGTCAATATCGGGAGAGGAGCAGGTGATTTCTTCGGATTCATCGCCGTTTGAGCAGGCGACGCTATTAGAAGAAAACGAGAGGCTTAGAAAGGAGAACATGAAGTTAAAGAAGGAAATAGAGGATATGAAATCCCTCTTCAATAATATATTCAATCTTATGTCTAACTATGCCAAGTTTCAAGCGGAAAGCGGTGCACAAGGAAAAGATTCTTGCTCCGTGGCACTGAAGACGCTTCATCCATTGCCGGAGAAGCGGTGCGATGGCAAAGACGCGGCGGAGATGGTGGTGGAGGATAATTACCCGAAGCTGTTTGGGGTGGTGATAGGTAAGAAGCGAGCGAGAGAAGAAGGTACAATGTTTAGCCTGAATCAATCAGTTCACGTGGACGACGAAAATCGGAGTCGTTTGATTTACAGAACTGTGTAA 870 0.4747 MAPSVEHNGDSSTGDSQRLTPTPFISKTYQIVDDRAIDDVVSWNDTGTSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNEFFRRGEKRLLCDIQRRKILSKSPSAVTNGSATATVAVVSSPLHSAKPVVSPSISGEEQVISSDSSPFEQATLLEENERLRKENMKLKKEIEDMKSLFNNIFNLMSNYAKFQAESGAQGKDSCSVALKTLHPLPEKRCDGKDAAEMVVEDNYPKLFGVVIGKKRAREEGTMFSLNQSVHVDDENRSRLIYRTV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02968 289 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g02968 289 FunFam Heat stress transcription factor B-4 16 114 - -
Vifa3g02968 289 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02968 289 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02968 289 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02968 289 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Vifa3g02968 289 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02968 289 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02968 289 Coils Coil 166 193 - -
Vifa3g02968 289 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 206 IPR027725 -
Vifa3g02968 289 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02968 289 Gene3D - 16 114 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02968 Vifa-Chr3 835088183 835089141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02968 9 265 HSF AT5G62020 51.264 8.90e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa3g02968 HSF_DNA-bind 1.3e-32 CL0123