Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02959 ATGGCTCCACCGGCGGAACACAGTGGCGACTCCTCAACCGGAGAGTCTCAAAGATCAACTCCCACACCGTTTATCACCAAAACGTACCAGATCGTTGATGACCGAACCATCGACGACGTCGTTTCATGGAACGAAACTGGAACATCGTTCGTCGTTTGGAACCCTGCCGTTTTCGCGAGGGATTTGCTTCCTAAATATTTCAAGCACAATAATTTCTCCAGCTTCGTTCGGCAACTCAATACTTATGGATTTAAAAAAGTTGTGCCTGATCGGTGGGAATTCTCTAACGAATTCTTTCGAAGAGGTGAGAAACGCCTTCTATGTGATATTCAGCGACGGAAGATCCTTTCGAAATCGCCGTCGGCAGTTATCAATAGCAGTGCAACCGCGACAGTAGCGGTGGTGTCATCTCCTTTGCATTCTGCAAAGCCGATTGTATCACCGTCAATATCGGGAGAGGAGCAGGTGATTTCTTCGGATTCATCGCCGTTTGAGCAGGCGACGCTATTAGAAGAAAACAAGAGGCTTAGAAAGGAGAACATGCAGTTAACTGCGGAAATAGAAGACATGAAATCCCTCTTCAATAATATATTCAATCTTATGTCTAATTATGCCAAATTTCAAGGAAAAAAGTGTTGCTCGACGGCAACAAAGACGGTTAGTATATCGCCGGGGAAGCGGTATGGGGTTGAAGATGCGGCGGAGATGGTGGTGGATGATAATTACCCGAAACTGTTTGGGGTGGCGATAGGTAAGAAGCGAGCGAGAGAAGAAGGAAAGTATGTTGAGGATAATACAGTGTTTAGCCTCAATCAATTTGATTTACAGAACTGTGTAAAGAGAAATACAATGTGCTAA 858 0.4499 MAPPAEHSGDSSTGESQRSTPTPFITKTYQIVDDRTIDDVVSWNETGTSFVVWNPAVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNEFFRRGEKRLLCDIQRRKILSKSPSAVINSSATATVAVVSSPLHSAKPIVSPSISGEEQVISSDSSPFEQATLLEENKRLRKENMQLTAEIEDMKSLFNNIFNLMSNYAKFQGKKCCSTATKTVSISPGKRYGVEDAAEMVVDDNYPKLFGVAIGKKRAREEGKYVEDNTVFSLNQFDLQNCVKRNTMC 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02959 285 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g02959 285 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Vifa3g02959 285 Gene3D - 16 114 IPR036388 -
Vifa3g02959 285 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02959 285 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02959 285 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02959 285 Coils Coil 166 193 - -
Vifa3g02959 285 FunFam Heat stress transcription factor B-4 16 114 - -
Vifa3g02959 285 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02959 285 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02959 285 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g02959 285 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 203 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02959 Vifa-Chr3 833110772 833111718 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02959 2 271 HSF AT5G62020 48.630 2.21e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa3g02959 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02959 K09419 - gmx:100780987 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02959 3 833110772 833111718 Vifa3g02959 3 833110772 833111718 ECH
Vifa1g04277 1 662862808 662863935 Vifa3g02959 3 833110772 833111718 PCT