Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02955 ATGAGAAACACAGATTTGAATCCCATTTTCATCTTCCTCCTTCTCCTTGTTTCTTATAATCATTATTACAGTACTGCAGAACCACAGCCGGGAAAACAACCATCGTTTCCTTATAGATCTCCGACAACTTTATGGGACGTGGCGTCGGTTAGTGTAATTGTTGGAGTCATCTTTGCAACACTTCTCTTAATTTTCATCTTCTTGTTGTTCCTGCGCAGCTACTTACTGTCTGGGTCATCAAAATGTGAAGTTGGCATTGGTATAAATCCTCAACTACTCAAAACTTTCCCAATTTTATTGTATTCTTCCTTAAACAAACATGTTAAGGAAGGTGATGAAGGTACTCTACCGTGTGCTGTGTGTCTCGCTGACTTCCATGATAATGACTCCATTCGTGTGTTACCTCAATGTAACCATTTCTTTCATCCTCCATGTATTGATGCTTGGCTTTCTTCACATGTCACTTGTCCTGTTTGTCGTACCAACCTCAATGTGAATTCATATTCATTGCAGATGTACATTTTTGGTTTGGCCAGAATGGAATCTATATTGGTCACAGTTCGTGGGATCCATCCATTTCCTGAATTCTGTTCCGCAAAAAAATTACAAATTTGA 615 0.3902 MRNTDLNPIFIFLLLLVSYNHYYSTAEPQPGKQPSFPYRSPTTLWDVASVSVIVGVIFATLLLIFIFLLFLRSYLLSGSSKCEVGIGINPQLLKTFPILLYSSLNKHVKEGDEGTLPCAVCLADFHDNDSIRVLPQCNHFFHPPCIDAWLSSHVTCPVCRTNLNVNSYSLQMYIFGLARMESILVTVRGIHPFPEFCSAKKLQI 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02955 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 170 - -
Vifa3g02955 204 SUPERFAMILY RING/U-box 117 166 - -
Vifa3g02955 204 CDD RING-H2_EL5-like 118 160 - -
Vifa3g02955 204 FunFam E3 ubiquitin-protein ligase ATL6 78 166 - -
Vifa3g02955 204 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Vifa3g02955 204 SMART ring_2 118 159 IPR001841 -
Vifa3g02955 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 166 IPR013083 -
Vifa3g02955 204 Pfam Ring finger domain 118 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02955 Vifa-Chr3 832046371 832047057 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02955 10 163 Rapid Response to Elicitors AT3G05200 36.905 1.35e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02955 K10664 - aprc:113871817 125.176