Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02953 ATGTTAGACTCAATGACACACTCAAATTTGAGTCCCATTTTCATCTTCCTCCTCCTTCTTGTTTCTTACCATCATCACTACGTTACTGCAGAAGTTCAGCCGGCAAAACAACCACCCTGTCCTTACGGATCTCCAACAGCATTATGGGATGTACCGCCGTTTGGTGTAATTGTTGGAGCCGCCATTGCAACACTTCTCTTAATTTTCATCTTCTTCTTGTTCCTTGGCCGCTACATATTGTTGGAGTCATCAAAATATGGAGTTGGCATTGGTATAAATCCTCAACTACTCAAAACTTTCCCAATTGTATTGTACTCTTCCATCACCAAACATGTTAAGGAAGGTGATGAAGGTCCTCTACCATGTACTGTGTGTCTCACTGACTTCGATGATAATGACACCATTCGTGTGTTACCTCAATGTAACCATTTCTTTCATCCTCCATGTATTGATGCTTGGCTTTCTACCCATGCCACTTGTCCTGTTTGTCGTACCAACCTCAACGGCGACCGTGGTATAGAATCGGTGTGA 531 0.4294 MLDSMTHSNLSPIFIFLLLLVSYHHHYVTAEVQPAKQPPCPYGSPTALWDVPPFGVIVGAAIATLLLIFIFFLFLGRYILLESSKYGVGIGINPQLLKTFPIVLYSSITKHVKEGDEGPLPCTVCLTDFDDNDTIRVLPQCNHFFHPPCIDAWLSTHATCPVCRTNLNGDRGIESV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02953 176 SMART ring_2 122 163 IPR001841 -
Vifa3g02953 176 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vifa3g02953 176 CDD RING-H2_EL5-like 122 164 - -
Vifa3g02953 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 169 IPR013083 -
Vifa3g02953 176 SUPERFAMILY RING/U-box 97 169 - -
Vifa3g02953 176 PANTHER RING FINGER DOMAIN-CONTAINING 35 167 - -
Vifa3g02953 176 FunFam E3 ubiquitin-protein ligase ATL6 82 170 - -
Vifa3g02953 176 Pfam Ring finger domain 122 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02953 Vifa-Chr3 831306628 831307158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02953 3 167 Rapid Response to Elicitors AT3G05200 35.393 4.30e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02953 K10664 - aprc:113871817 115.161