Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02931 ATGGAAAATCACAATGATTCTTCTGAGTGGCAGAACTTGAACTCAAGTTCTTGGTCTCAATACAGTGATCATTCACACTTTGCTGCACAAATTCTACCTCAAAATATCTCTGATTCTTCTTCTTCTGCTTCTTTTCAATATAGTGAGTTTCAGTCATGGTCTTTACCTATTGAAGGGAGTTTAGAAGATAGAGCAGTAAGTGCTTCCAAGAGTCATAGCCAAGCAGAGAAAAGACGCAGAGATAGAATCAATACTCAGCTTGCTAATCTCAGAAAACTTATTCCTATGTCCGATAAGATGGACAAAGCAGCTTTACTAGGGAGTGTAATAAATCATGTCAAAGACCTAAAGAGAAAAGCAATGGATGTTAGCAGAGTCATCACAGTTCCAACTGAAATCGATGAAGTATCAATAGACTACAACCATGTTATTGAAGACGAAACCAGCACTAACAAAGTGGACAAATTCAAGAAAAATATCATCATCAAGGCTTCTGTTTGCTGCGACGATCGACCAGAACTGTTCTCTGAACTAATCCAAGTCCTCAGAGGGTTAAGACTTACAACAGTTAAAGCAGACATAGCAAGTGTTGGTGGCAGAATCAAAAGCATATTGGTGCTATGTTCTAAGGACAGTGAAGAGAATGTTTGCGTTAACACTCTCAAACAGTCCCTTAAATCAGCAGTGACCAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACTAGAAGTAAGAGGCAAAGGTTCTTTTTGCCTTCACATTTCGTATAG 774 0.3837 MENHNDSSEWQNLNSSSWSQYSDHSHFAAQILPQNISDSSSSASFQYSEFQSWSLPIEGSLEDRAVSASKSHSQAEKRRRDRINTQLANLRKLIPMSDKMDKAALLGSVINHVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVIEDETSTNKVDKFKKNIIIKASVCCDDRPELFSELIQVLRGLRLTTVKADIASVGGRIKSILVLCSKDSEENVCVNTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02931 257 SMART finulus 73 122 IPR011598 GO:0046983
Vifa3g02931 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 120 IPR036638 GO:0046983
Vifa3g02931 257 Gene3D - 62 124 IPR036638 GO:0046983
Vifa3g02931 257 CDD ACT_UUR-ACR-like 165 200 - -
Vifa3g02931 257 CDD bHLH_AtAIG1_like 62 139 - -
Vifa3g02931 257 PANTHER TRANSCRIPTION FACTOR BHLH30 27 253 IPR045847 GO:0003700|GO:0006355
Vifa3g02931 257 Pfam Helix-loop-helix DNA-binding domain 70 116 IPR011598 GO:0046983
Vifa3g02931 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02931 Vifa-Chr3 823372791 823374298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02931 1 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 44.195 1.59e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g02931 HLH 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02931 - - gmx:100799687 357.836