Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02922 ATGGTAAACCAAAGACAACGCCTCGCCAAGAAACGCTTCAAAGCCGAAAACCCCTCACTCTTCCCCAAACCAGAACCCACTCCGCCAAAAGATCCATCCAAGAAAAAAAAACCCAAATTCAAACGCAAAAAGCCCGACTCCAAAGACAAACCCCGCACCGGAAAACGCCCCCTCCGAGTCCCCGGAATGAAACCCGGCGACAGCTGTTTCATCTGCAAGGGGTTAGATCATATCGCTAAGTTTTGTAGCGAGAAAGCTGAGTGGGAGAGGAATAAGATTTGTTTGCGGTGTCGGCGACGGGGGCATAGAGCTCAGAATTGTCCTGATGGGTCTAAGGATGTGAAGTTTTGTTATAATTGTGGTGATAATGGTCACTCTCTTGCGAATTGTCCGTATCCTCTTGAGGAAGGAGGGACGAAGTTTGCTGAGTGTTTTGTTTGTAATGAACAAGGCCATTTGAGTAAGAATTGCCCTAAAAATGCTAATGGCATTTATCCAAAGGGTGGTTGTTGTAAATTATGCGGTGGTGTGTCACATTTGGCGAAGGATTGTCCTAACAAAGGGCAGAATGGATTTGGTGGTGCTGCTAAAGGGCTTGTTCATAACTTGCTGAGAACTGATGAGAGGCCCAAGGGTCAAGTTACCAAATTTGTGAGCGGAGATGATATGGAAGATGACTTTACCTCACAAGCAATAGAAAACGATGAGAAGAACAAGTCTGCCAAGTCCAAAGATGTCAATGTAAAACCAAAGAAAGGTCCTAAAGTCGTAAATTTTGACTAG 783 0.4508 MVNQRQRLAKKRFKAENPSLFPKPEPTPPKDPSKKKKPKFKRKKPDSKDKPRTGKRPLRVPGMKPGDSCFICKGLDHIAKFCSEKAEWERNKICLRCRRRGHRAQNCPDGSKDVKFCYNCGDNGHSLANCPYPLEEGGTKFAECFVCNEQGHLSKNCPKNANGIYPKGGCCKLCGGVSHLAKDCPNKGQNGFGGAAKGLVHNLLRTDERPKGQVTKFVSGDDMEDDFTSQAIENDEKNKSAKSKDVNVKPKKGPKVVNFD 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02922 260 Gene3D - 62 113 - -
Vifa3g02922 260 MobiDBLite consensus disorder prediction 231 260 - -
Vifa3g02922 260 FunFam Zinc finger CCHC-type-containing 9 141 193 - -
Vifa3g02922 260 Pfam Zinc knuckle 117 131 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 Pfam Zinc knuckle 144 159 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 Gene3D - 114 164 - -
Vifa3g02922 260 ProSiteProfiles Zinc finger CCHC-type profile. 144 159 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 ProSiteProfiles Zinc finger CCHC-type profile. 117 131 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 PANTHER OS04G0555800 PROTEIN 1 259 - -
Vifa3g02922 260 ProSiteProfiles Zinc finger CCHC-type profile. 94 109 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 SUPERFAMILY Retrovirus zinc finger-like domains 62 110 IPR036875 GO:0003676|GO:0008270
Vifa3g02922 260 MobiDBLite consensus disorder prediction 231 251 - -
Vifa3g02922 260 SUPERFAMILY Retrovirus zinc finger-like domains 110 161 IPR036875 GO:0003676|GO:0008270
Vifa3g02922 260 ProSiteProfiles Zinc finger CCHC-type profile. 171 186 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 SMART c2hcfinal6 170 186 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 SMART c2hcfinal6 143 159 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 SMART c2hcfinal6 68 84 IPR001878 GO:0003676|GO:0008270
Vifa3g02922 260 MobiDBLite consensus disorder prediction 34 49 - -
Vifa3g02922 260 MobiDBLite consensus disorder prediction 1 62 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02922 94 187 C2H2 Transcription Factor Family AT5G20220 29.825 4.32e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02922 - - gmx:121174300 342.043