Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02905 ATGTCAGAATCTGAGGAAGAAAATCAAGATTTTCCTCCCAAAACAAAAACATCCTTAGAAGAACATGGTTGTGCTATGGATTTTGATCTGGATTTAGAAACTTCATGGCCTTTGGATCACATGTCTTTTATCTCAAACCCTATGTCACCTTTTCTGTTTTCCACCATCTCTGATCAACCTTCCTCTCCTCTATGGGTTTTTAGTGATGGAGAAGATGACAAACATGCCAAACTTGCTGCTTCAGCTTTTTCTGATTGCCACAAGATCTTCTCTTGTGATTTGAATTCAATAACTGAGAAACCGGTCGAGTACGATGACAACAAAACGTTTATGCCGCCACTGATGCCACCAATAGAAAATTTGGATGGATATTGTGCAATCAAAGAAAAGATGACACAAGCGCTTCGCTATTTCAAAGAGTGGACTGAACTGAATATTCTGGCTCAGGTTTGGGCACCGGTGAGGAATGGTAATCGGTATGAACTTACAACTTCAGGTCAACCCTTTGTGCTTGATCCGCATAGTAATGGACTCAATCAGTATAGGACGGCTTCCCTGATGTATAAGTTTTCGGTGGATGGAGAGAATGATGGAACTCTAGGACTTCCTGGTCGAGTTTTCCAGCAGAAACTACCGGAATGGTCTCCAAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTATAACGTTCGGGGAACCTTGGCTTTGCCTGTATTTGAACCTTCGTTGCAGTCATGTATCGGTGTGATAGAGTTGATTATGACTTCACTGAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATTCACTCAGATTTGCAATGAAGGGCGTCAAAATGCGTTATCCGAGATCTTGGAGATATTGACAGTGGTGTGCGAAACTCATAATTTACCTCTCGCGCAAACATGGGTTCCGTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGACGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGAGGTAGCAGCCTATATTATAGATGCTCATTTATGGGGTTTTCGAGAGGCGTGTGTCGAGCATCACTTACAACATGGTCAAGGTGTTGCTGGAAGAGCTTTTTTGTCACAAAACATGAGCTTCTGCACAAACATTACAAAGTTCTGCAAAACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACTGGCTCTTTTTCAATCTGTTTACGGAGTTTTCACACGGGAAATGACGATTATGTATTAGAATTTTTTCTTCCTCCTGGGATCACCGAATTTCATGAACAGAAGACACTTTTGGGATCCATATTGGCAACAATGAAACAGCATTTTCAGAGTCTTAGTATTGCTGCTGGTGTTGAACTTGAGGAAAACAGTCCAATTGAAATTATTGAAGCAACAGATGAAGGCATCCGTGTTAGGATTGAATCTATTCCAATTGCTCAATCTATTAAATCACCGCCTATACCCGATGCCTCGCCAAATATGGAGGAGGAGGAGGAGTTACCACGTGATCCATTAGAGATTCATTGTGAAAATGTAGGCGGAAGCATTGATCCGGTGTCCTCTTTAGGGAATAAAAACATAAAGAAACCCTCAGAGAGGAAGCGTGGAAAAACTGAGAAATCTATCAGTCTTGAAGTTCTACAACGTTATTTCGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGCGTATGCCCTACTACAATGAAGCGCATATGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCAAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGGGCTGAAGGGACGTTTGATTTGAATTCTCTCAACACTAATCAACTTCCAGTTGCTAGCTCTTTCCCCGAGCATTCTACTCCGAACAAGTCCAGCCAGCAAGCCTCATTAAACAATAGGCCATCAGAGCCTCAGATGAAAGAGAATGAATTTCATGCCCAAAAAGAAACAAATATACCAATTGTATTGGAAGATGAACTGCTTAGAGGAAGCAAACATGGTCTTGGCAAGGACCGAAAAAGGACTCGAAGCAGGAGTATCTCGAGCGAAGATAGCATAAATCCTACTTCTCATGGTTCGTGCCATGATAGTCCCCCGAATGAAATTTCAACCATTAAAGATCCGTTCATTCCTCCCAACAATGAGCAATATGTTGTTCTGAGGGGATCGCCAGAGTCGAGAGTGCAGCCAACTAATGCATTCAACTCTCCAACTGCTCACGGTTTGCCCGACAACATCTTAGCAGAACTTCAAGAGCCGTTTGGAGGAATGCTAATAGAGGATGCAGGTAGTTCAAAAGACTTGAGAAATTTGTGTCCTTCTGTAGCTGAGGCCATTGTGGAGGATCTAGCTCCAGAACCTTATGGGAACAACCTTCCATGTTCATATCTGGCTCCTCAACAATGCATGGAAGCTACTAATAAATCAGTGACGCCTATTGCAGCTAGAAAAGAAATGAAAACTGCGACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGAGTCTCTTTGAACTGTGGCATTGCGGAATTGAAAGAGGAAGTTGCCAAAAGACTGAAACTTGAGATTGGTACATTTGATGTCAAGTATATGGATGATGATAATGAATGGGTTTTGATTGCCTGTGATGCAGACCTGCAGGAGTGTATGTATGTCTCAAGATCATCGGGTGGAAGCAACATAATCCGAGTTTTGGTGCATGACATAATGTCGAATCTCGGAAGCTCCTGGGAGAGCTCGGGGGAGTGA 2889 0.4254 MSESEEENQDFPPKTKTSLEEHGCAMDFDLDLETSWPLDHMSFISNPMSPFLFSTISDQPSSPLWVFSDGEDDKHAKLAASAFSDCHKIFSCDLNSITEKPVEYDDNKTFMPPLMPPIENLDGYCAIKEKMTQALRYFKEWTELNILAQVWAPVRNGNRYELTTSGQPFVLDPHSNGLNQYRTASLMYKFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLQSCIGVIELIMTSLKINYAPEVEKICKALEAVNLRSSEILDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEVAAYIIDAHLWGFREACVEHHLQHGQGVAGRAFLSQNMSFCTNITKFCKTDYPLVHYALMFGLTGSFSICLRSFHTGNDDYVLEFFLPPGITEFHEQKTLLGSILATMKQHFQSLSIAAGVELEENSPIEIIEATDEGIRVRIESIPIAQSIKSPPIPDASPNMEEEEELPRDPLEIHCENVGGSIDPVSSLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFDLNSLNTNQLPVASSFPEHSTPNKSSQQASLNNRPSEPQMKENEFHAQKETNIPIVLEDELLRGSKHGLGKDRKRTRSRSISSEDSINPTSHGSCHDSPPNEISTIKDPFIPPNNEQYVVLRGSPESRVQPTNAFNSPTAHGLPDNILAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAIVEDLAPEPYGNNLPCSYLAPQQCMEATNKSVTPIAARKEMKTATIKATYREDIIRFRVSLNCGIAELKEEVAKRLKLEIGTFDVKYMDDDNEWVLIACDADLQECMYVSRSSGGSNIIRVLVHDIMSNLGSSWESSGE 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02905 962 Gene3D - 863 946 - -
Vifa3g02905 962 ProSiteProfiles RWP-RK domain profile. 562 643 IPR003035 -
Vifa3g02905 962 Pfam RWP-RK domain 575 623 IPR003035 -
Vifa3g02905 962 ProSiteProfiles PB1 domain profile. 866 949 IPR000270 GO:0005515
Vifa3g02905 962 CDD PB1_NLP 868 948 IPR034891 -
Vifa3g02905 962 MobiDBLite consensus disorder prediction 726 745 - -
Vifa3g02905 962 MobiDBLite consensus disorder prediction 655 684 - -
Vifa3g02905 962 MobiDBLite consensus disorder prediction 708 752 - -
Vifa3g02905 962 PANTHER PROTEIN NLP8 58 961 IPR045012 GO:0003700
Vifa3g02905 962 MobiDBLite consensus disorder prediction 554 573 - -
Vifa3g02905 962 SMART PB1_new 866 949 IPR000270 GO:0005515
Vifa3g02905 962 MobiDBLite consensus disorder prediction 655 682 - -
Vifa3g02905 962 Pfam PB1 domain 868 948 IPR000270 GO:0005515
Vifa3g02905 962 SUPERFAMILY CAD & PB1 domains 865 952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02905 Vifa-Chr3 816722398 816726221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02905 261 962 NLP Transcription Factor Family AT4G24020 54.482 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vifa3g02905 PB1 5.7e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02905 - - gmx:100785821 1474.14