Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02903 ATGGGTAGCATCCAGGAAGCGGTATCGGTTGCGGAAGAGCGAGTGGAGGATGTGGAAAACGACACCGTTTATGTTGCGGTGGGGAAGAACGTGAAGAAGAGCCAACGACTGTTGCATTGGGTAAATCAGAATTTCTCAGGGAAGAAAATTTGTCTTCTTCATGTTCACCAATTCGATCATCTGAGTTCGTTGAACACAGATGACTCTGAAATAGAACCTAAAGACGATGTAATCAAGGCATTCGAGGAGGTTGATAGGAAAACAGTGTATGAACTCCTAGACCAGTTCATCCTCACTCTGGTTCCAGAAGGGGTACAGGCCTCTAAATTGTTGATTGAGAAGGATAATATTGAGAAAGGGATCATAGAAGCTATTGCTCAACACAATATTAGATGTCTAGTTATGGGAGCAGCTGCAGACAAACATAAGATGAGGTTAGATAGTGAAGACACACCTGTAATAGAGATTGCCCCTGTATTATTGATGCTCGACTCCAATATGGAAGCCAAACAATCTGAAAAAATTAAATCACAATTGATTCCGGATGTATTGAAGTATTTAGATTCTGGTGACATGGAAGAGACTGAAAATGTCAATTCCCAGTGCTCTTTAAATGCAGAATGGTCCTTTAACAGTGTTATTGCAAGGACAAAGTTGACAGATTTGCTTATTCATGAGGAGGCAGAAGATGAAAAAGAACAGGATGATGAAGCATTACAAAACTGGCGTGCTAAGGAGATAAGTAGAAGAGAAGAGGTCGAAGAACAATTGGCAAGGGAAAAGCAAGACGTACAAGAAATGAAGAATCAGCAAGGTAAAATCGTATGTGAATTGGAGATGCTCGAAGACCAAATTTCAGCTCTTAGAAACCAATTGTTTGAGTCCAAGTGTTCGGCAACTGAGTTGGAAGAGAAGATTTTATTAGCTGTGGATCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTGAGGATCGAACATGCAAATGCAGTTAAGAAAGTTGAAATGCTGAGAAAATTTGAAGAAGTGGATACTACATCCTCTTATGTGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAGTTGTGGAAGTGTTTACAAAGGAATGCTTCGCAACATGCTTGTTGCCATAAAAATGCTCCCCTCTTATGGTTGTCAGAACCAGTTTGAGTTCCAGCATCAGGTAGAGGTTTTAAGTAGAGTAAGGCATCCGAACCTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAAGTCACTTGTGTATGAATACCTAAACAATGGTAGCCTTGAAAGTCATTTTGCATGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATGTCCATTGCTACTGACATATGCTCTGCTTTAATCTTCCTTCACTCAAGTGAGCCTTGTATTATCCATGGGAATTTGAAGCCTAGTAAGGTTCTGCTTGATGCTAACTTTGTTGCCAAAGTTGGTGACTTGGGGATTCCTTCTTTAGTCCAGCATAGTGGGGATTCAGCTGACACTGGGACAGGAGTATGTAACAACTCACATAAAAGTTTGGTGTATGTGGATCCAGAGTATCTTGATACCGGTAAACTTACACCGGAGTCAGATGTGTATTCATTTGGAATCATACTCTTACAACTTCTAACTGGAAGACCACTTTTTGGGCTAGTTAGAGATATGAAATGCGCATTGGAAAAAGAGAATCTTAAAACTGTGTTGGACTTTTCAGCTGGTGAATGGCCACTTCATCAAACCACACAAATGGCATGTTTAGCATTAAGGTGTTGTGAGAAGGATTGGCTGAACCGGCCAGATCTTGTATCAGAAGTCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCGTAAACAGGAGACAGGAGTTGACTTCTAAGAAGCTTCAACGAGCTCCTTCTCACTTTGTCTGCCCCATTGTCCAGGAAGTTATGGAAGATCCCTATATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGGGGATGGTTGGACAGTGGTCACAATACTTCCCCCATGACAAACCTCAAGCTTGAACATACAGATTTAGTACCTAATTATGCATTGCATAATGCCATTCGGGAGTGGCAGCAACAGTGA 2166 0.4095 MGSIQEAVSVAEERVEDVENDTVYVAVGKNVKKSQRLLHWVNQNFSGKKICLLHVHQFDHLSSLNTDDSEIEPKDDVIKAFEEVDRKTVYELLDQFILTLVPEGVQASKLLIEKDNIEKGIIEAIAQHNIRCLVMGAAADKHKMRLDSEDTPVIEIAPVLLMLDSNMEAKQSEKIKSQLIPDVLKYLDSGDMEETENVNSQCSLNAEWSFNSVIARTKLTDLLIHEEAEDEKEQDDEALQNWRAKEISRREEVEEQLAREKQDVQEMKNQQGKIVCELEMLEDQISALRNQLFESKCSATELEEKILLAVDLLISFKEKRDKLRIEHANAVKKVEMLRKFEEVDTTSSYVVEFPAFSFMEINEATHDFDQSWKIGEGSCGSVYKGMLRNMLVAIKMLPSYGCQNQFEFQHQVEVLSRVRHPNLLTLIGSCAESKSLVYEYLNNGSLESHFACKDKTPLPWQIRMSIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKVGDLGIPSLVQHSGDSADTGTGVCNNSHKSLVYVDPEYLDTGKLTPESDVYSFGIILLQLLTGRPLFGLVRDMKCALEKENLKTVLDFSAGEWPLHQTTQMACLALRCCEKDWLNRPDLVSEVWSVLKPFRTICVNRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHNTSPMTNLKLEHTDLVPNYALHNAIREWQQQ 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02903 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 721 IPR013083 -
Vifa3g02903 721 SUPERFAMILY Protein kinase-like (PK-like) 344 622 IPR011009 -
Vifa3g02903 721 Gene3D HUPs 12 138 IPR014729 -
Vifa3g02903 721 SUPERFAMILY RING/U-box 649 721 - -
Vifa3g02903 721 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 32 138 - -
Vifa3g02903 721 Coils Coil 1 21 - -
Vifa3g02903 721 Coils Coil 225 298 - -
Vifa3g02903 721 Gene3D Transferase(Phosphotransferase) domain 1 441 636 - -
Vifa3g02903 721 Pfam U-box domain 652 720 IPR003613 GO:0004842|GO:0016567
Vifa3g02903 721 ProSiteProfiles Protein kinase domain profile. 368 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02903 721 CDD RING-Ubox_WDSUB1-like 653 708 - -
Vifa3g02903 721 ProSiteProfiles U-box domain profile. 651 721 IPR003613 GO:0004842|GO:0016567
Vifa3g02903 721 PANTHER OS02G0152300 PROTEIN 23 717 - -
Vifa3g02903 721 Gene3D Phosphorylase Kinase; domain 1 338 440 - -
Vifa3g02903 721 SMART Ubox_2 655 718 IPR003613 GO:0004842|GO:0016567
Vifa3g02903 721 Pfam Protein tyrosine and serine/threonine kinase 373 622 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02903 Vifa-Chr3 815589005 815596707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02903 220 721 U-box Gene Family AT3G49060 48.932 2.25e-157 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa3g02903 PK_Tyr_Ser-Thr 1.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02903 - - aprc:113871315 1016.53