Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02902 ATGGGTAGCATCCAGGAAGCGGTATCGGTTGCGGAAGAGCGAGTGGAGGATGTGGAAAACGACACCGTTTATGTTGCGGTGGGGAAGAACGTGAAGAAGAGCCAACGACTGTTGCATTGGGTAAATCAGAATTTCTCAGGGAAGAAAATTTGTCTTCTTCATGTTCACCAATTCGATCATCTGAGTTCGTTGACAGACACAGATGACTCTGAAATAGAACCTAAAGACGATGTAATCAAGGCATTCGAGGAGGTTGATAGGAAAACAGTGTATGAACTCCTAGACCAGTTCATCCTCACTCTGGTTCCAGAAGGGGTACAGGCCTCTAAATTGTTGATTGAGAAGGATAATATTGAGAAAGGGATCATAGAAGCTATTGCTCAACACAATATTAGATGTCTAGTTATGGGAGCAGCTGCAGACAAACATAAGATGAGGTTAGATAGTGAAGACACACCTGTAATAGAGATTGCCCCTGTATTATTGATGCTCGACTCCAATATGGAAGCCAAACAATCTGAAAAAATTAAATCACAATTGATTCCGGATGTATTGAAGTATTTAGATTCTGGTGACATGGAAGAGACTGAAAATGTCAATTCCCAGTGCTCTTTAAATGCAGAATGGTCCTTTAACAGTGTTATTGCAAGGACAAAGTTGACAGATTTGCTTATTCATGAGGATGATGAAGCATTACAAAACTGGCGTGCTAAGGAGATAAGTAGAAGAGAAGAGGTCGAAGAACAATTGGCAAGGGAAAAGCAAGACGTACAAGAAATGAAGAATCAGCAAGGTAAAATCGTATGTGAATTGGAGATGCTCGAAGACCAAATTTCAGCTCTTAGAAACCAATTGTTTGAGTCCAAGTGTTCGGCAACTGAGTTGGAAGAGAAGATTTTATTAGCTGTGGATCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTGAGGATCGAACATGCAAATGCAGTTAAGAAAGTTGAAATGCTGAGAAAATTTGAAGAAGTGGATACTACATCCTCTTATGTGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAGTTGTGGAAGTGTTTACAAAGGAATGCTTCGCAACATGCTTGTTGCCATAAAAATGCTCCCCTCTTATGGTTGTCAGAACCAGTTTGAGTTCCAGCATCAGGTAGAGGTTTTAAGTAGAGTAAGGCATCCGAACCTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAAGTCACTTGTGTATGAATACCTAAACAATGGTAGCCTTGAAAGTCATTTTGCATGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATGTCCATTGCTACTGACATATGCTCTGCTTTAATCTTCCTTCACTCAAGTGAGCCTTGTATTATCCATGGGAATTTGAAGCCTAGTAAGGTTCTGCTTGATGCTAACTTTGTTGCCAAAGTTGGTGACTTGGGGATTCCTTCTTTAGTCCAGCATAGTGGGGATTCAGCTGACACTGGGACAGGAGTATGTAACAACTCACATAAAAGTTTGGTGTATGTGGATCCAGAGTATCTTGATACCGGTAAACTTACACCGGAGTCAGATGTGTATTCATTTGGAATCATACTCTTACAACTTCTAACTGGAAGACCACTTTTTGGGCTAGTTAGAGATATGAAATGCGCATTGGAAAAAGAGAATCTTAAAACTGTGTTGGACTTTTCAGCTGGTGAATGGCCACTTCATCAAACCACACAAATGGCATGTTTAGCATTAAGGTGTTGTGAGAAGGATTGGCTGAACCGGCCAGATCTTGTATCAGAAGTCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCGTAAACAGGAGACAGGAGTTGACTTCTAAGAAGCTTCAACGAGCTCCTTCTCACTTTGTCTGCCCCATTGTCCAGGAAGTTATGGAAGATCCCTATATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGGGGATGGTTGGACAGTGGTCACAATACTTCCCCCATGACAAACCTCAAGCTTGAACATACAGATTTAGTACCTAATTATGCATTGCATAATGCCATTCGGGAGTGGCAGCAACAGTGA 2145 0.4098 MGSIQEAVSVAEERVEDVENDTVYVAVGKNVKKSQRLLHWVNQNFSGKKICLLHVHQFDHLSSLTDTDDSEIEPKDDVIKAFEEVDRKTVYELLDQFILTLVPEGVQASKLLIEKDNIEKGIIEAIAQHNIRCLVMGAAADKHKMRLDSEDTPVIEIAPVLLMLDSNMEAKQSEKIKSQLIPDVLKYLDSGDMEETENVNSQCSLNAEWSFNSVIARTKLTDLLIHEDDEALQNWRAKEISRREEVEEQLAREKQDVQEMKNQQGKIVCELEMLEDQISALRNQLFESKCSATELEEKILLAVDLLISFKEKRDKLRIEHANAVKKVEMLRKFEEVDTTSSYVVEFPAFSFMEINEATHDFDQSWKIGEGSCGSVYKGMLRNMLVAIKMLPSYGCQNQFEFQHQVEVLSRVRHPNLLTLIGSCAESKSLVYEYLNNGSLESHFACKDKTPLPWQIRMSIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKVGDLGIPSLVQHSGDSADTGTGVCNNSHKSLVYVDPEYLDTGKLTPESDVYSFGIILLQLLTGRPLFGLVRDMKCALEKENLKTVLDFSAGEWPLHQTTQMACLALRCCEKDWLNRPDLVSEVWSVLKPFRTICVNRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHNTSPMTNLKLEHTDLVPNYALHNAIREWQQQ 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02902 714 Gene3D Transferase(Phosphotransferase) domain 1 434 629 - -
Vifa3g02902 714 Coils Coil 236 291 - -
Vifa3g02902 714 SUPERFAMILY Protein kinase-like (PK-like) 337 615 IPR011009 -
Vifa3g02902 714 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 32 139 - -
Vifa3g02902 714 SUPERFAMILY RING/U-box 642 714 - -
Vifa3g02902 714 Gene3D HUPs 12 139 IPR014729 -
Vifa3g02902 714 ProSiteProfiles U-box domain profile. 644 714 IPR003613 GO:0004842|GO:0016567
Vifa3g02902 714 Coils Coil 1 21 - -
Vifa3g02902 714 CDD RING-Ubox_WDSUB1-like 646 701 - -
Vifa3g02902 714 Pfam Protein tyrosine and serine/threonine kinase 366 615 IPR001245 GO:0004672|GO:0006468
Vifa3g02902 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 714 IPR013083 -
Vifa3g02902 714 ProSiteProfiles Protein kinase domain profile. 361 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02902 714 Pfam U-box domain 645 713 IPR003613 GO:0004842|GO:0016567
Vifa3g02902 714 Gene3D Phosphorylase Kinase; domain 1 331 433 - -
Vifa3g02902 714 PANTHER OS02G0152300 PROTEIN 23 153 - -
Vifa3g02902 714 SMART Ubox_2 648 711 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02902 Vifa-Chr3 815589005 815596707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02902 230 714 U-box Gene Family AT3G49060 50.511 1.79e-157 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa3g02902 PK_Tyr_Ser-Thr 1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02902 - - aprc:113871315 1011.13