Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02899 ATGTCAATGGATATGATGGCAACAGAACGTGTTTGCTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAATGTTCCATACAGCAGTTTGTTAGCCATAGTGACAGTAAGGTGTGGACATTGTGCTAATTTGTTATCAGTTAACATGATGGCAGCATCAATTCAACCATTTCCTCCTCCTCAACTTCCTCAGAAACAGCACATAATGTATGAAGAAGCAAGCATCAAAGAAACAGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGTAGTAGAGCATGAACAACCTAGGATTCCACCCATTCGACCTTTAGAGAAAAGACATCGGGTTCCTTCTGCTTATAACCGGTTTATTAAGGAGGAAATTCAAAGGATCAAGACCAATAATCCAGATATTAGTCACAGGGAGGCTTTCAGCTCAGCGGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAACAAGCAAAGTTGGATCAAGCTGAAGGAACTCATGAAAAGTCTAATGGATTCTACTGA 540 0.4019 MSMDMMATERVCYVHCNFCNTILAVNVPYSSLLAIVTVRCGHCANLLSVNMMAASIQPFPPPQLPQKQHIMYEEASIKETGSSSSKCNKIASFEVVEHEQPRIPPIRPLEKRHRVPSAYNRFIKEEIQRIKTNNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDQAEGTHEKSNGFY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02899 179 CDD HMG-box_SF 114 150 - -
Vifa3g02899 179 PANTHER PROTEIN YABBY 6-RELATED 1 166 IPR006780 GO:0007275
Vifa3g02899 179 Gene3D High mobility group box domain 109 175 IPR036910 -
Vifa3g02899 179 SUPERFAMILY HMG-box 105 154 IPR036910 -
Vifa3g02899 179 Pfam YABBY protein 7 159 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02899 Vifa-Chr3 814601229 814611264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02899 1 179 C2C2-YABBY Transcription Factor Family AT1G08465 58.201 8.80e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vifa3g02899 YABBY 3.9e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02899 K25796 - gmx:100500091 285.034