Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02898 ATGTCAATGGATATGATGGCAACAGAACGTGTTTGCTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAATGTTCCATACAGCAGTTTGTTAGCCATAGTGACAGTAAGGTGTGGACATTGTGCTAATTTGTTATCAGTTAACATGATGGCAGCATCAATTCAACCATTTCCTCCTCCTCAACTTCCTCAGCCACAGAAACAGCACATAATGTATGAAGAAGCAAGCATCAAAGAAACAGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGTAGTAGAGCATGAACAACCTAGGATTCCACCCATTCGACCTTTAGAGAAAAGACATCGGGTTCCTTCTGCTTATAACCGGTTTATTAAGGAGGAAATTCAAAGGATCAAGACCAATAATCCAGATATTAGTCACAGGGAGGCTTTCAGCTCAGCGGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAACAAGCAAAGTTGGATCAAGCTGAAGGAACTCATGAAAAGTCTAATGGATTCTACTGA 546 0.4048 MSMDMMATERVCYVHCNFCNTILAVNVPYSSLLAIVTVRCGHCANLLSVNMMAASIQPFPPPQLPQPQKQHIMYEEASIKETGSSSSKCNKIASFEVVEHEQPRIPPIRPLEKRHRVPSAYNRFIKEEIQRIKTNNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDQAEGTHEKSNGFY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02898 181 CDD HMG-box_SF 116 152 - -
Vifa3g02898 181 Gene3D High mobility group box domain 111 177 IPR036910 -
Vifa3g02898 181 Pfam YABBY protein 7 161 IPR006780 GO:0007275
Vifa3g02898 181 PANTHER PROTEIN YABBY 6-RELATED 1 168 IPR006780 GO:0007275
Vifa3g02898 181 SUPERFAMILY HMG-box 107 156 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02898 Vifa-Chr3 814601229 814611264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02898 1 181 C2C2-YABBY Transcription Factor Family AT1G08465 59.259 2.28e-71 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vifa3g02898 YABBY 1.7e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02898 K25796 - gmx:100500026 284.648