Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02896 ATGCCAGTTGCAAAACTTACTGCCTCAGGGACTCCCAATTTTATGAAACCAGAAGATGGAAACGATTCTTTGGATACATTGATCAGACAAGCAATTGGAAAAGAATCTTTTCTTTCCTATCCAAGAGCTGGTGACAGGCCAGCGCAGTGGATTCAATTGTTTCATGCTTTAGAACAGCAGCAAGAAATTCCAGGGTGGCCTGTGTTTTCTCCTGCGAAGGTTCAGATATTAAAGTGTGACAAGTGTACTAAAGAGTTTTGCTCACCAATTAATTATAGAAGACATAAACGTGTACACCATCGGTTGAAAAAGCTTGATAAGGACTCTAAAAAAAATAGGGATCTTTTACAGGCATATTGGGATAAGCTCTCGGTAGAAGAGGCAAAGGAAGTTGTGTCGTTTAAGAATGTAATGCTGGAGGAGGTTCCGGGGTCTTCAGTTATACAAGCTCTCTCAACTCTTAGAACACAACAAGGATTCTATTCTTTTCCACATGGTTACCTCAGAGCTGGTTTTGCCCTTTTGGATATTGTTCAATCCAGGCCTTCTAGTTTCCCTATATCTTCACAGAAGCTGTTCGATATTCTAGATGATTCCAGTGAAAAAACATTTTTGTGTGGAACAGCAGTGTCAATGCAAAGACATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTAAAGGCATGGCTCGCAGACAAGGATGCTGAAGCATTGAGATGCCAGAAGCTGCTGGTGGAGGAGGAGGAAGCTGCTCAGAGAAGACAAGCCGAGATTTTGGAGAGAAAACGTCAGAAAAAGCTTAGGCAGAAAGAACAGAAGGCGCGAGGCCGACCTGAAAATGACACAGAAGTTAAAGAGAGTATTAGCACCACAGGAGAGAATGTATCACCAGAGGAAGCATCTTTGGCTGCATGTGACTTTGAAGCATCTTTGGCTGCATGTGACTTTGAAGCACATAGAGCAGATGTAGTTGCTGATCATGCTTCACCCCTTGTAACTTATCACTGCCCAGACACCAACGTGGATTCAAAGTCAGGATTTCATTGTGACACTGATCAGAATATGGAGCAGTGGAAATCACAAAGGGATGCACAACCAGGTTATGATTGTGACACTGATCGGAATTTAGAGAGACAGACATCACACAGACATAATCCTCGGCGCACAGTGGCTGCTAGACGGCAAGGGCTGCCTAAGTCACAACGTACAATTGCCAATGGTTTGTATGCAAGCCAAAACTCTCAAAAGTCAAAGTTTGGAGTCATTCCAAAATATGGAACCAACCGTGATCAGAGGGCAGCTCCTATAGTTAACGGTGGTAAAGTTTGGAGCCGGAAGCCTAAACCAGAAACAGATGCAGTGGTTATGAAAGCCAGACTGCATAAAGAGCCAGACAAAATTAAGAATCATGAGGTTTTGATAGGATCTGTCTCTGTTACACTGGCCAATTGCAGCCAATCAGAGGGTAATCTTGTCACATCTCAAGCAAACAGCTTAGTAGGTAATTTGGCCGACCAAAATATTACTCAGGAGAAGCCAATTAAACCTGACTCCTTTCAGGGAGGCAACAATCGATCAAGAAGTAAGCTTTGGAGACCGGTTAATCTGCACGGAACTAAAAATCCGCTGCCACTTCAAAGTGCTGAGACAGAAGTTGATGGAAAAGATGATCAAAATTTGTCTGTTCAAAGTAGTTTAAGGTCGTGTAATATAGATGGAAGTGATATTAGTTCTGGCGACAAATCCAATGTCGGGGATAAAGCAGATATAGAAAACGTTCAGTTTTCCAGCCATGCTGCAAAAGCCTTTCTTGCAAAAAGATGGAAAGAAGCAATTTCATCACCTCATGTTCAGTTGGTTATTTCACCTGATTCTGAACTTCCTGGGTTACAGCCGGTCATGGAATGTGAGCCAGCACCTTATCGATCTTCTAATTCAGATAGATGCAGTGTTCTTGCAAATACAGAGAACTGGTTGCCTGCAACCTCTGGAGTTGCTAAATCAAAATCCAGAATCAAGTCGGAGAAGGGAATCAAGATAAAGTACATTCCAAAACTAAAAGCTGCATCATAA 2127 0.4241 MPVAKLTASGTPNFMKPEDGNDSLDTLIRQAIGKESFLSYPRAGDRPAQWIQLFHALEQQQEIPGWPVFSPAKVQILKCDKCTKEFCSPINYRRHKRVHHRLKKLDKDSKKNRDLLQAYWDKLSVEEAKEVVSFKNVMLEEVPGSSVIQALSTLRTQQGFYSFPHGYLRAGFALLDIVQSRPSSFPISSQKLFDILDDSSEKTFLCGTAVSMQRHVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLVEEEEAAQRRQAEILERKRQKKLRQKEQKARGRPENDTEVKESISTTGENVSPEEASLAACDFEASLAACDFEAHRADVVADHASPLVTYHCPDTNVDSKSGFHCDTDQNMEQWKSQRDAQPGYDCDTDRNLERQTSHRHNPRRTVAARRQGLPKSQRTIANGLYASQNSQKSKFGVIPKYGTNRDQRAAPIVNGGKVWSRKPKPETDAVVMKARLHKEPDKIKNHEVLIGSVSVTLANCSQSEGNLVTSQANSLVGNLADQNITQEKPIKPDSFQGGNNRSRSKLWRPVNLHGTKNPLPLQSAETEVDGKDDQNLSVQSSLRSCNIDGSDISSGDKSNVGDKADIENVQFSSHAAKAFLAKRWKEAISSPHVQLVISPDSELPGLQPVMECEPAPYRSSNSDRCSVLANTENWLPATSGVAKSKSRIKSEKGIKIKYIPKLKAAS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02896 708 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g02896 708 ProSitePatterns Zinc finger C2H2 type domain signature. 79 100 IPR013087 -
Vifa3g02896 708 MobiDBLite consensus disorder prediction 525 575 - -
Vifa3g02896 708 MobiDBLite consensus disorder prediction 525 548 - -
Vifa3g02896 708 MobiDBLite consensus disorder prediction 290 304 - -
Vifa3g02896 708 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Vifa3g02896 708 MobiDBLite consensus disorder prediction 392 413 - -
Vifa3g02896 708 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 706 - -
Vifa3g02896 708 MobiDBLite consensus disorder prediction 279 315 - -
Vifa3g02896 708 SMART c2h2final6 77 99 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02896 Vifa-Chr3 813608985 813615159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02896 18 703 C2H2 Transcription Factor Family AT4G25610 40.974 2.57e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g02896 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02896 3 813608985 813615159 Vifa3g02896 3 813608985 813615159 ECH
Vifa1g04372 1 679631059 679642808 Vifa3g02896 3 813608985 813615159 PCT