Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02891 ATGCCTACATGGTGGGGAAAATCATCATCAAAAGAAACTAGGAAGAAAGCAGGTAAGGAAAGTATTATTGACACATTGCACCGGAAATTTAAATTTCCATCTGACGGTAAATTAAGCACTAGATCTGGAGGATCTCGTAGACGAAGCAATGACACAATTTCAGAGAAAGGGGATCTATCTCCATCCGGATCAAGATCTCCTTCACCTTCCAAAGTAGCAAGGTGTCAAAGTTTTGCTGAAAGGCCTCATGCTCAACCACTTCCACTTCCTGGTCTACACCCTTCAAGTGTAGGTCGAGTGGATTCTGAAATTAGTATATCAGCAAAATCAAGACTGGAAAAGTCCTCCAAGTCATCATTGTTTCTTCCACTTCCGAAACCTGGATGCATACGCTGCGGGACAAATCCTGCAGATTTGGATGGAGATATGGTCAACCCTTCAGTCTTCAGTGATTGCTCTGCTGATAGTGATGAGCCAGCAGACTCACGCAATCGTAGTCCTCTGGCAACTGACTCCGAAACTGGGACTAGAACTGCTGCTGGCAGTCCTTCCAGCTTGATGCTCAAGGATCAATCGCCTGCTGTTGCCCAACTGAATTCGAGAGAAGTAAAAACACCGACAAACATTCTAAGTAATCATACATCTTCTACTTCACCTAAGCGAAGGCCTTTACGACACCATGTTCCAAATCTTCAGGTTCCTCCTCATGGTGTCTTCTATAGTGGTCCCGACAGTTCCTTGTCAAGTCCATCAAGAAGCCCGTTGAGGGCATTTGGTACAGATCAGGTGTTGAATTCTGCATTTTGGGCTGGAAAGCCATATCCAGAGATCAATTTCGTCGGATCTGGCCACTGCTCTAGTCCAGGTTCTGGTCACAACTCGGGGCATAATTCAATGGGAGGGGACATGTCGGGACCATTATTTTGGCAACCAAGTAGGGGTAGTCCTGAGTATTCTCCGGTACCTAGTCCTAGAATGACTAGCCCTGGTCCAAGCTCAAGAATTCAGAGTGGAGCAGTCACACCTATTCATCCTAGAGCAGTGGGAACACCGACTGACTCACAAACAGGATGGGTTGATGAGGGAAAACAACAGAGTCATCGTTTGCCTCTCCCTCCTTTAACAGTTACCAATATCTCGCCATTCTCTCATTCTAATTCTGCAGCAACATCTCCATCTATGCCAAGAAGTCCAGCTAGAGCAGATAGTCCAATGAGCTCTGGTTCACGTTGGAAAAAAGGGAAGCTGCTTGGCAGAGGCACGTTTGGACATGTCTATATTGGCTTCAATAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACTATGTTTACAGATGATGCCAAATCTATGGAAAGTGCTAAGCAGTTAATGCAGGAAATTCATTTGTTGAGCCGTTTAAGACATCCAAATATTGTGCAGTATTATGGTTCTGAAACAGTAGACGACAAGCTTTACATATACCTTGAGTATGTATCTGGAGGCTCCATACATAAACTTCTTCAAGATTATGGGCAGTTTGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTGTCAGGGCTTGCTTATTTACATGCTAAAAATACTCTTCATAGGGACATCAAAGGAGCAAACATACTGGTAGATCCAAATGGCCGGGTCAAGGTTGCGGACTTTGGCATGGCAAAACATATAACAGGGCAATACTGTCCTTTGTCATTCAAAGGAAGTCCTTATTGGATGGCTCCTGAGGTTATAAAGAATTCCAAGGAGTGCAGCCTTGGTGTGGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACTAAACCTCCATGGTCTCAGTACGAAGGGGTTGCTGCCATGTTCAAAATTGGTAACAGCAAGGAGCTCCCAACAATCCCGGAACATCTCTCAAATGAAGGAAAAGATTTTGTTAGGAAATGTCTACAACGTAATCCACGTGATCGCCCTTCGGCAAGTGAATTATTGGACCACCCTTTTGTAAAAGGTGCTGCACCTTTGGAAAGACCTATTGTGGTTCCTGAAGCTTCAGATCCTATTTCTGGAATTACACACGGAACAAAAGCTCTGGGCATTGGACAAGGAAGAAATCTGTCTGCTTTGGATACAGATAAACTCTTTATTCATTCTTCCCGGGTTTTGAAAAGCAATCCTAATGAAAGTGAAACCCATATTCAAAGGAATATATCTTGCCCAGTCTCTCCCATCGGAAGCCCACTTTTGAGGTCAAGATCACCACATCAGAGAAGTGGGAGATTGTCTCCTTCTCCTATATCTAGCCCTCGGACTGCTTCAGGTGCTTCCACGCCTCTCACTGGCGGCGGCAGTGGTGCCATTCCATTCAGTAATCACTTAAAACAGTCTGTTTACTTTCAAGAGTGTCTTGGAAGCTTGCCGAAATCCTCAAACTACATTAACGGCTCCTCTCATCATGACAATATCGACATTTTTCGAGGAATGCAAATCGGGTCTCATATTAAATCAGAACTCGTCTCCTCCGAAAATGATGCTCTCACTAAGCAGTTTGTAAGGTCTCCTCATCCAGAGCCATATGACTTTCAATCGGTCTTGGCCGATCGTGTTGGCCGGCAGCTGCTGGGAGATCATGTCAAGATTAACCCATCATTTGATCCAAACCCCAGCTCGTCGTTGCTCAACCGAACAAATGGTTTATGA 2694 0.4443 MPTWWGKSSSKETRKKAGKESIIDTLHRKFKFPSDGKLSTRSGGSRRRSNDTISEKGDLSPSGSRSPSPSKVARCQSFAERPHAQPLPLPGLHPSSVGRVDSEISISAKSRLEKSSKSSLFLPLPKPGCIRCGTNPADLDGDMVNPSVFSDCSADSDEPADSRNRSPLATDSETGTRTAAGSPSSLMLKDQSPAVAQLNSREVKTPTNILSNHTSSTSPKRRPLRHHVPNLQVPPHGVFYSGPDSSLSSPSRSPLRAFGTDQVLNSAFWAGKPYPEINFVGSGHCSSPGSGHNSGHNSMGGDMSGPLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAVGTPTDSQTGWVDEGKQQSHRLPLPPLTVTNISPFSHSNSAATSPSMPRSPARADSPMSSGSRWKKGKLLGRGTFGHVYIGFNSESGEMCAMKEVTMFTDDAKSMESAKQLMQEIHLLSRLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLQDYGQFGELAIRSYTQQILSGLAYLHAKNTLHRDIKGANILVDPNGRVKVADFGMAKHITGQYCPLSFKGSPYWMAPEVIKNSKECSLGVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPEHLSNEGKDFVRKCLQRNPRDRPSASELLDHPFVKGAAPLERPIVVPEASDPISGITHGTKALGIGQGRNLSALDTDKLFIHSSRVLKSNPNESETHIQRNISCPVSPIGSPLLRSRSPHQRSGRLSPSPISSPRTASGASTPLTGGGSGAIPFSNHLKQSVYFQECLGSLPKSSNYINGSSHHDNIDIFRGMQIGSHIKSELVSSENDALTKQFVRSPHPEPYDFQSVLADRVGRQLLGDHVKINPSFDPNPSSSLLNRTNGL 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02891 897 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 62 676 - -
Vifa3g02891 897 CDD STKc_MEKK1_plant 410 667 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 165 186 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 724 739 - -
Vifa3g02891 897 SMART serkin_6 411 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02891 897 ProSiteProfiles Protein kinase domain profile. 411 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02891 897 MobiDBLite consensus disorder prediction 878 897 - -
Vifa3g02891 897 SUPERFAMILY Protein kinase-like (PK-like) 409 668 IPR011009 -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 348 362 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 55 73 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 200 225 - -
Vifa3g02891 897 Pfam Protein kinase domain 412 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02891 897 MobiDBLite consensus disorder prediction 9 54 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 133 186 - -
Vifa3g02891 897 Gene3D Transferase(Phosphotransferase) domain 1 408 683 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 286 300 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 1 98 - -
Vifa3g02891 897 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Vifa3g02891 897 MobiDBLite consensus disorder prediction 724 781 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 747 781 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 370 404 - -
Vifa3g02891 897 FunFam Mitogen-activated protein kinase kinase kinase 409 691 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 881 897 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 286 412 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 109 128 - -
Vifa3g02891 897 MobiDBLite consensus disorder prediction 200 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02891 Vifa-Chr3 812386192 812390152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02891 1 895 MAP Kinase Kinase Kinase AT1G63700 57.270 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa3g02891 Pkinase 2.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02891 K20717 - gmx:100797994 1454.11