Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02885 ATGTCTTCACCGGGGTTCACCGGCGGTATTGGATCCTCCGATCTATACGGCCGAGCAACCAACTTTGCCGGTAGATCTATCACTCTTCCATCCAACATGAACAACAACAACATCAATAATAACAATCAATTCTCAACCGCAACCACCACCACCACCACCCAGAATTTTCATAACCCTTTCCACCGTGCCCAAATCCAAGAAAACCGATCATCAAACCTTATCAGAAGATACCTTGACCCTGCTTCCCAAATCGCACATCCCCTAAATTCCACCCTCGTCCGAAAACGTACCCTCTCTGAATTTCAAACCCAAACCCAAAACATCAACAACAACAACCTTAGCAACAACCTTAACAACAACAACCTTCATACCACCAATACCGCTAACGCTTTTCTTTCAAACCTCGTACTTCGTTCTGTCAAAGCTAGAAATTTTCTACACGGTTCTCCTATGTCACCTCTTTCTCCTATGGATTCCTCAAATTCACCAGATTCTTCTTCCTCCTCCGCTATAGCCACGCTTCTTCGCTCCAACCCTAGTGGTCAAAACTCAATCCCCGTGAATAATTCCACCCCCCAAAACACGATTTTTCAATATCAAAATTCCAATTTTGATGAGATTCGAACAACACTCCCTGACCCACAAAAGAAAATGATGGAGGATTGCTTAATGGAGTTGGAAAAACAGCTTCTTGATGACAATGACGAAGAAGTAGAACCCGACCCAAATTCTGTGCTTACAAACAGTGAATGGTCGGAAACAATTCAGAATTTGATTAGCTTCGAGCAAAACCCGATTCTAATACCCGTTTCATCTCCCGCTTCATCCAACAATTCATCTTCTTCCTCTGTTGTTTCACCTGCTATGTTCTCTTCCAAGCAATCGTTAGTGGAAGCGGCTAACGCGATTTCCGAAGGTAGAATCGATGCTGCTTCGGAGATCCTTAACCGTTTGATTCAGTTAGTGAATCCATTGCTGAATTTTGATGGTAGATTAACCTATTGTATGGTCTCAGCGATGAAATCCCGTATGAATCCTTGCGAAATTCCGCCTCCAATAGCGGAATTGTTCAGCAAGGAACACGCTGAGTCAACTCAGCTTCTGTTTGATAATTCTCTCTGCTTTAAGGTCGCTTTCATGGCTGCCAACGTCGCAATCATCGAAGCTGCATTCGATGCAACAACAGCTACAGAGAGCAGTAACAACAATATGAAGAATCTTTGTGTGGTGGATTTTGATATTGGCCATGGGCAAAGATACATTAACCTTCTCCATGAGCTACACGCGCGTATCAAAAGTTCAGGTTCACCGGCAACTTTGAAGATCACAGCTGTTGTTGATAACATCAACGACGAGAGGTTGAAGATGGTGTGTGACAATTTGAGTTTACAAGCTGAGCGTTTAACAATCGGGTTTGAATTTAAAGTGGTGACACTGAAAATCGCTGAGCTAACTCGCGAGTCTTTGGGTTTCAACTCGGAGGATATTCTTGCTGTGAACTTCGCGTTCAAGCTTTTCAGAATGCCAGACGAAAGCGTGTCAACTGAGAATCCACGCGACGAGCTTCTCCGGCGCGTGAAATCACTCTCCCCGGTTGTAGTTACCCTCTTAGAGCAAGAGATGAATACAAACACCGCACCATTCGTTGCACGAGTGGCTGAGTCATTTTCCTATTACGGCACGTTGATTGATTCAATTGAGTCAACACTGGGAAAGGAAAGTATGGATCGAGTCAAGATTGAGGAGGGGCTGAGTCGGAAATTGGGCAACACGGTTGCTTGTGAAGGTAGGGATCGCGTGGAGCGTTGTGAAGTGTTTGGGAAGTGGCGTGCACGGATGAGTATGGCTGGGTTTAGGTTGAACCCGGTGAGTCAGAAAGTTGCTGAGTCAGTGAAAGCGCGACTCGCTCCGGGAAGTCGAGTTACTGTGAATGAGGAAAACGGTGGGGTTTGTTTTGGGTGGATGGGAAGAACACTAACCGTCGCATCTGCTTGGCGTTAA 2001 0.4528 MSSPGFTGGIGSSDLYGRATNFAGRSITLPSNMNNNNINNNNQFSTATTTTTTQNFHNPFHRAQIQENRSSNLIRRYLDPASQIAHPLNSTLVRKRTLSEFQTQTQNINNNNLSNNLNNNNLHTTNTANAFLSNLVLRSVKARNFLHGSPMSPLSPMDSSNSPDSSSSSAIATLLRSNPSGQNSIPVNNSTPQNTIFQYQNSNFDEIRTTLPDPQKKMMEDCLMELEKQLLDDNDEEVEPDPNSVLTNSEWSETIQNLISFEQNPILIPVSSPASSNNSSSSSVVSPAMFSSKQSLVEAANAISEGRIDAASEILNRLIQLVNPLLNFDGRLTYCMVSAMKSRMNPCEIPPPIAELFSKEHAESTQLLFDNSLCFKVAFMAANVAIIEAAFDATTATESSNNNMKNLCVVDFDIGHGQRYINLLHELHARIKSSGSPATLKITAVVDNINDERLKMVCDNLSLQAERLTIGFEFKVVTLKIAELTRESLGFNSEDILAVNFAFKLFRMPDESVSTENPRDELLRRVKSLSPVVVTLLEQEMNTNTAPFVARVAESFSYYGTLIDSIESTLGKESMDRVKIEEGLSRKLGNTVACEGRDRVERCEVFGKWRARMSMAGFRLNPVSQKVAESVKARLAPGSRVTVNEENGGVCFGWMGRTLTVASAWR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02885 666 ProSiteProfiles GRAS family profile. 283 666 IPR005202 -
Vifa3g02885 666 Pfam GRAS domain family 293 666 IPR005202 -
Vifa3g02885 666 MobiDBLite consensus disorder prediction 151 170 - -
Vifa3g02885 666 MobiDBLite consensus disorder prediction 153 170 - -
Vifa3g02885 666 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 234 656 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02885 Vifa-Chr3 809849795 809851795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02885 122 666 GRAS Transcription Factor Family AT5G52510 46.918 2.82e-136 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa3g02885 GRAS 9.3e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02885 - - tpra:123914170 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02885 3 809849795 809851795 Vifa3g02885 3 809849795 809851795 ECH
Vifa1g04471 1 694122947 694124983 Vifa3g02885 3 809849795 809851795 PCT