LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g02874	ATGGAAAAACATAACCTTATCTTTTTAACCCTTCTCTTCTTTCTACCTTGTTCACTTTCCTTTGTTCCTATAGACAACTACTTAATCAACTGTGGATCACACAACAATGCTTCACTCTTCAATAGAGTCTTTATGAGTGATTCAACCAATGCAGGCTTGAATTTTTTCTCTTCAGATGATTCCATTGCTCTCATGAACAAAAACCCATCTCCAAATTTGCTAACTTTGTATCAATCAGCTAGAGTTTTTGTCACCACTGGGAGATACAGGTTCAATATGAAGAAAAATGGTACTCATTTGATTCGTTTTCATTTCTTTCCTTTTAAAGATCAAGGTTTTGACTTGAAATCTGCAAAATTTAGTGTTTTTGTTAATGGAATTTCGATTCTGAGTGAGTTTAAGCCACCTGGTGAGGCTATGATTAAAGAGTTTATTTTGAAGATTGAGTCAAACTTGCTTGAAATTTTGTTTAGACCCTTTGATTCAGGTTTTGGATTTGTAAATGCTGTGGAAGTTTTTACTGCTCCTGAAGATTTTGTTATAGATTATGGAACAAGGTTGGTTGGTCCTTCTGGTATGGAAGAGTACAAAAACATTTCATCTCAGGTTTTAGAAACTATTCTTAGGATTAATGTTGGAGGTGTGAAAGTAACTCCTTTCAATGATACCCTTTGGAGGACTTGGATTCCTGATGAGGATTATTTGGTTTTTAAGGAAGCAGCTAAACATGCAGTAAGCACTCATACACCTGATTACGAAAAGGGAGGTGCGACTCCGGAGATCGCGCCTGAAAATGTTTACATGACTGCTCAACAGATGAATAGAGAAAACACAAGTTTAGCTTCAAGGTTTAACATAACATGGAAGTTTCCTGTGGCTTCTGAAGGTGTTCCGCACTTGATTCGGTTGCATTTCTGTGATATAGTTAGTACTTCTCTCAATTTGCTTTACTTTGATGTGTATATCAATGGTTACATTGCATATAAGGATCTTGATTTGTCGTCGCTTACATTTCACACTCTTGCATCGCCGGTGTATGTGGATTTTGTTGCTAATTCGGACGATTCGGGTGTTATTGAAATAAGTGTTGGTCCTTCTGAGCTGAGTAGTTCTATAAGAATTAATGCGATATTGAATGGTGCAGAGCTAATGAAGATTGTCAACGATGTCGATAATACTAAGATTGTGCACAGGAGGAAACATTTATGGGTGTTGATAGGTTCAGTTATTGGAGGAATTGTTGTTTTGTTTTTGGTTTTAACTGTTGTTCTACTTGCTACCAAATGCAGGAAGAAGAGACCAAAAGAAACGACGGTCGGAAGTGTGGGATGGACGCCTTTGCGTATGTTCGGAGGTAGTTCTCTTAGTAGAACATCCGAACACGGTTCGTATGGATATCTTGGAATGAAGATCCCTTTTGCTGATATACAATCAGCAACAAACAATTTCGATAGAAACTTGATTATAGGGTCTGGTGGATTTGGTATGGTTTACAAAGGAGTACTTGGAGACAATGTAAAAGTTGCTGTCAAGAGAGGTATGCCAGGTTCAAGACAAGGCCTTCCGGAATTCCACTCTGAAATAACGATTTTATCCAAAATTCGCCATCGCCATCTTGTTTCATTAGTTGGTTTCTGTGAAGAAAATTCAGAAATGATACTTGTCTATGAGTATGTCGAAAGAGGTCCATTGAAAAAACATTTATATGGTTCGTCGCGACAACCTCCTCTCAATTGGAAGCAACGGCTCGAGGTATGCATCGGTGCAGCTAGAGGTTTGCATTATCTTCATACTGGCTTCGCTCAAGGAATCATCCACCGCGACATTAAATCGACCAACATATTGGTCGACGAAGATTATGTAGCAAAGGTTGCTGATTTTGGTCTTTCGAGATCAGGGCCATGTATCAACGAAACTCATGTGAGTACTGGTGTGAAAGGTAGTTTTGGCTATCTTGATCCCGAGTATTACCGTAGGCAACAACTAACCGATAAATCTGATGTATATTCATTCGGAGTTGTTCTTTTCGAGGTTCTTTGTGGAAGACCTGCAGTTGATCCACAACTGACTAGAGAACAGGTGAATTTAGCAGAATGGGCTATTGAATGGCTGCAGAAGGGAATGCTGGATCATATTGTTGACCCTCATATTATCGATGAGATCAAACCAAGATCATTGAAGAAATTTGGCGAAACAGCAGAGAAATGTTTAGCTGAATACGGTGTCGACAGACCAACTATGGGTGATGTCTTGTGGAATTTGGAATATGCACTTCAGCTTCAAGAAAGCGAACAACAAAGGGTGATACACGATGATAGCGGTGGTAGCGAAGCAGATTACGAAACAACAAGAACCATTCATGAAAACTCTAGCAGCAGAAGAATAGAGAGAGATTATGACAATGATTGTTCAGATGTTAGTACTAGCCAAGTGTTTTCCCAGCTCATGAATAATAATGGTAGATGA	2466	0.3889	MEKHNLIFLTLLFFLPCSLSFVPIDNYLINCGSHNNASLFNRVFMSDSTNAGLNFFSSDDSIALMNKNPSPNLLTLYQSARVFVTTGRYRFNMKKNGTHLIRFHFFPFKDQGFDLKSAKFSVFVNGISILSEFKPPGEAMIKEFILKIESNLLEILFRPFDSGFGFVNAVEVFTAPEDFVIDYGTRLVGPSGMEEYKNISSQVLETILRINVGGVKVTPFNDTLWRTWIPDEDYLVFKEAAKHAVSTHTPDYEKGGATPEIAPENVYMTAQQMNRENTSLASRFNITWKFPVASEGVPHLIRLHFCDIVSTSLNLLYFDVYINGYIAYKDLDLSSLTFHTLASPVYVDFVANSDDSGVIEISVGPSELSSSIRINAILNGAELMKIVNDVDNTKIVHRRKHLWVLIGSVIGGIVVLFLVLTVVLLATKCRKKRPKETTVGSVGWTPLRMFGGSSLSRTSEHGSYGYLGMKIPFADIQSATNNFDRNLIIGSGGFGMVYKGVLGDNVKVAVKRGMPGSRQGLPEFHSEITILSKIRHRHLVSLVGFCEENSEMILVYEYVERGPLKKHLYGSSRQPPLNWKQRLEVCIGAARGLHYLHTGFAQGIIHRDIKSTNILVDEDYVAKVADFGLSRSGPCINETHVSTGVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLTREQVNLAEWAIEWLQKGMLDHIVDPHIIDEIKPRSLKKFGETAEKCLAEYGVDRPTMGDVLWNLEYALQLQESEQQRVIHDDSGGSEADYETTRTIHENSSSRRIERDYDNDCSDVSTSQVFSQLMNNNGR	821

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g02874	821	Gene3D	-	203	388	-	-
	Vifa3g02874	821	Gene3D	-	26	176	-	-
	Vifa3g02874	821	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	604	616	IPR008271	GO:0004672\|GO:0006468
	Vifa3g02874	821	Gene3D	Phosphorylase Kinase; domain 1	454	558	-	-
	Vifa3g02874	821	SMART	serkin_6	483	757	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa3g02874	821	FunFam	receptor-like protein kinase FERONIA	451	558	-	-
	Vifa3g02874	821	Gene3D	Transferase(Phosphotransferase) domain 1	559	779	-	-
	Vifa3g02874	821	ProSitePatterns	Protein kinases ATP-binding region signature.	489	511	IPR017441	GO:0005524
	Vifa3g02874	821	FunFam	Receptor-like protein kinase FERONIA	203	388	-	-
	Vifa3g02874	821	FunFam	Putative receptor-like protein kinase	26	176	-	-
	Vifa3g02874	821	MobiDBLite	consensus disorder prediction	765	802	-	-
	Vifa3g02874	821	FunFam	Receptor-like protein kinase FERONIA	559	771	-	-
	Vifa3g02874	821	SUPERFAMILY	Protein kinase-like (PK-like)	459	755	IPR011009	-
	Vifa3g02874	821	Pfam	Protein tyrosine and serine/threonine kinase	488	684	IPR001245	GO:0004672\|GO:0006468
	Vifa3g02874	821	PANTHER	OS07G0166700 PROTEIN	470	761	IPR045272	GO:0004714\|GO:0006468
	Vifa3g02874	821	CDD	STKc_IRAK	489	755	-	-
	Vifa3g02874	821	Pfam	Malectin-like domain	29	386	IPR024788	-
	Vifa3g02874	821	ProSiteProfiles	Protein kinase domain profile.	483	757	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g02874	Vifa-Chr3	808062191	808064656	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g02874	6	821	Receptor kinase-like Gene Family	AT3G46290	46.619	0.0	719

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vifa3g02874		Malectin_like	2.2e-31	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g02874	-		-	gmx:100801169	1282.32