Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02861 ATGGATGAAGATTGGGATTTGTTTGCCATCGTTAGAAGTTGTCAATCGTCTACCAATAATACTACAAGCAATAGTACTACACCATCTTCCATTAATTCCACTTGTGATTTCAATGTAGAATTAGAATATGATGCATTTTCTTTTCCCAATATAGTGCAACCTATAACCAATGAGATTCAAGAGCTAAACCAATTATTCACATCTTTTAACCCCACCAACACCACTACTACCACTAGTGCTCATGGTATCAATCCCTATTCCCCTACTCATATGGCAAAATGCATTGGACAACAACAACACCATCTTCCCCCTATTACTTCCTCTTCCATTTGGCCTAACTTTGTTCAAGAAGCATCCACTTCTACCTTCAACAATTTCAATAATCAACATCTACAAACAATTCAGAAACAAGATTTTCAAGTACCACAAAGCTTCCAACCTCAAACACCAAGATCAAGAAAAAGAAAAAGTCAACAAGGGAAAATGGTGTGTCATGTAACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGCGAAAATATGGACAAAAACCTATTAAAGGTTCTCCATATCCAAGGAACTATTATAGATGTAGTAGTTCCAAAGGTTGTACTGCACGAAAGCAAGTTGAAAGAAGCAACACTGAAGCAGACATGTTTATTGTGACATACACAGGAGATCACAACCATCCAAAACCTACCCACCGGAACTCGCTCGCCGGGAGTACACGAACCAAGTCTCCGACGGTGCAGCCATCCACTTCAATTTCTTGTCAACCTAACAACACAAATTCTTCTCCGTCCTCGTTAGGAGCTTCGGTTGAAGAAGAAGAGGATATGGAAGTGGAAATGGAAACTGATGAGGAAGGTGAAGAAGGTTGTGAATTGTGA 891 0.3996 MDEDWDLFAIVRSCQSSTNNTTSNSTTPSSINSTCDFNVELEYDAFSFPNIVQPITNEIQELNQLFTSFNPTNTTTTTSAHGINPYSPTHMAKCIGQQQHHLPPITSSSIWPNFVQEASTSTFNNFNNQHLQTIQKQDFQVPQSFQPQTPRSRKRKSQQGKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCTARKQVERSNTEADMFIVTYTGDHNHPKPTHRNSLAGSTRTKSPTVQPSTSISCQPNNTNSSPSSLGASVEEEEDMEVEMETDEEGEEGCEL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02861 296 FunFam WRKY transcription factor 22 155 226 - -
Vifa3g02861 296 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 286 IPR044810 GO:0003700
Vifa3g02861 296 Pfam WRKY DNA -binding domain 174 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g02861 296 MobiDBLite consensus disorder prediction 139 162 - -
Vifa3g02861 296 SMART WRKY_cls 172 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g02861 296 ProSiteProfiles WRKY domain profile. 167 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g02861 296 MobiDBLite consensus disorder prediction 139 153 - -
Vifa3g02861 296 SUPERFAMILY WRKY DNA-binding domain 167 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g02861 296 Gene3D WRKY domain 156 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g02861 296 MobiDBLite consensus disorder prediction 224 296 - -
Vifa3g02861 296 MobiDBLite consensus disorder prediction 235 272 - -
Vifa3g02861 296 MobiDBLite consensus disorder prediction 274 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02861 Vifa-Chr3 804182321 804183685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02861 151 252 WRKY Transcription Factor Family AT5G52830 79.412 1.03e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa3g02861 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02861 - - mtr:11414845 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00946 4 277074890 277076263 Vifa3g02861 3 804182321 804183685 ECH
Vifa3g02861 3 804182321 804183685 Vifa3g02861 3 804182321 804183685 ECH