Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02857 ATGGAAGATCTTCCATCACCACTTCCACCAAAAACATACACACTAACAGCAACTTCAATCTCTTACACCAAAAACCTACAAACAAACAACATCATCGTTGCACCATTTCTCATCTTCAAAAACTGCACACCAACTCCACCAACCTACATCCTCAAAGATGTTTCCCTCACAGCTTACCCTTCTGAGATTCTCGCCATTGTAGGACCAAGTGGTGCAGGAAAATCAACCCTTTTAGACATTCTTTCAGCTCGAAGATTACCCTTAAGTGGAACACTTTCACTTAACTCTTCACCTATTACCAACCCTTCAACATTCAGAAAACTCTCAGCTTATGTTCCTCAACATGATGCGTGTCTTCCTATGTTAACCGTTGCCGAAACTTTCGCCTTTTCTGCTTCTCTTCTTAAGCCTAAAACAATTGATATTGCTTCCATTGTTTCATCTCTTTTGAATGAGCTTAGACTAACACATTTGGCTAACACAAGGCTTAATCATGGTTTATCTGGTGGTGAACATAGAAGGGTCTCTATAGGACTTAGTCTTCTTCATGATCCTGCTGTTTTGTTACTTGATGAACCTACTTCTGGTCTTGATAGTTCATCTGCTTTCAAAGTCATGCAAACTCTTAAATCAACTTGTGTTTCATATAATAGAACCATTGTTCTTTCCATTCATCAACCAAGTTTCAAGATTCTCTCTTGCATTGATAGAATCTTGCTTCTTTCAAAAGGAACTGTTGTTCATCATGGAAGTTTAGCTTCACTTCAATCCTTCTTGCATTCAAAAGGGTTCACTGTTCCACATCAGCTTAATGCATTGGAATATGCTATGGAAATATTAAACCAATTGAATGAGGTTAGTCTTAGTCCAATGATTACTCTACCTAGTCCACCTGAATCAGCAGAAAGTTCTAAATCTACTATAGTTTCTTCTCTATCTGACAATATTGGAAGAACTAAAAGAAAAAGCAAAGATCTCAGGTACAAGAGTTCAAGGATTCATGAAATTTGTACACTTTTTAAACGTTTCTGGAAGATCATATACAGAACAAGACAACTTCTTTTGACAAACACAGCAGAAGCACTTCTGGTTGGTCTTGTTTTAGGAACAATTTACATCAACATTGGGTTTGATAAAGAAAGTATTGTGAAAAGGTCTGGTTTATTTGCATTCACTCTAACCTTCTTACTATCTTCCACAACTGAAACACTTCCAATCTTTATCAATGAGAGACCAATCTTGTTAAGAGAAACATCAAGTGGTGTTTATAGGCTGTCATCTTATCTTATAGCCAACACACTTGTTTTCTTGCCATATTTGCTAGTAGTTGCTGTTATTTACTCTATTCCAGTTTATTTCTTGGTTGGTCTTTGTAGTTCTTGGTTATCTTTTGCTTATTTTGTTCTAGTCATTTGGGTTATAGTTCTTATGGCAAACTCATTTGTCCTTTTCTTGAGTTCTCTTGCACCAAACTACATTGCTGGAACTTCACTCTTGACAGTACTACTTGCAGCATTTTTTCTCTTCTCTGGTTACTTTATCTCCAAGGAATGTTTACCTAAGTATTGGCTCTTCATGCACTTCTTTTCTATGTATAAATACGCGCTCGATGCACTTCTTATCAACGAGTATTCTTGCTTAGCAACAAGGTGTTTGATATGGTTTCAAGAGAATGATCATCAGTGCATGATCACTGGTGGTGATGTGTTGCAGAAGAGAGGGCTCCATGAGAGACAAAGATGGACCAATGTGTACTTTTTGATTGGCTTCTTTCTTTTTTATCGTGTCCTTTGTTTCTTGGTTTTGCTTAGAAAGATTTCAAGATCTAAAACTTGA 1836 0.3687 MEDLPSPLPPKTYTLTATSISYTKNLQTNNIIVAPFLIFKNCTPTPPTYILKDVSLTAYPSEILAIVGPSGAGKSTLLDILSARRLPLSGTLSLNSSPITNPSTFRKLSAYVPQHDACLPMLTVAETFAFSASLLKPKTIDIASIVSSLLNELRLTHLANTRLNHGLSGGEHRRVSIGLSLLHDPAVLLLDEPTSGLDSSSAFKVMQTLKSTCVSYNRTIVLSIHQPSFKILSCIDRILLLSKGTVVHHGSLASLQSFLHSKGFTVPHQLNALEYAMEILNQLNEVSLSPMITLPSPPESAESSKSTIVSSLSDNIGRTKRKSKDLRYKSSRIHEICTLFKRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFDKESIVKRSGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLVVAVIYSIPVYFLVGLCSSWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKECLPKYWLFMHFFSMYKYALDALLINEYSCLATRCLIWFQENDHQCMITGGDVLQKRGLHERQRWTNVYFLIGFFLFYRVLCFLVLLRKISRSKT 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02857 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 268 IPR003439 GO:0005524
Vifa3g02857 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 13 596 - -
Vifa3g02857 611 Pfam ABC-2 type transporter 225 292 IPR043926 GO:0140359
Vifa3g02857 611 SMART AAA_5 60 245 IPR003593 GO:0016887
Vifa3g02857 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 256 IPR027417 -
Vifa3g02857 611 Pfam ABC-2 type transporter 335 544 IPR013525 GO:0016020|GO:0140359
Vifa3g02857 611 Pfam ABC transporter 51 195 IPR003439 GO:0005524
Vifa3g02857 611 FunFam ATP-binding cassette transporter 40 261 - -
Vifa3g02857 611 Gene3D - 39 288 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02857 Vifa-Chr3 802861987 802863822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02857 46 319 Calmodulin-binding Proteins AT2G36910 25.357 7.28e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02857 K05681 - gmx:100790712 891.338