Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02845 ATGGGAAAAATTGTTGGGATTGGAAGTGTTTCTGAGTCTAATCAGATTTCTCAGGATCCGTTTATGGAGTTCCTCATGGAACAAGTCATTGAGGGAAAGGATAGTGATGTCACATTTGATAACTTTCCTTTTTACTTAAGTGAAAGGATCAAAATTTTGTTGACAAGTGCTGGATATTTTCATTTAAGACAACATGACCTATCCAACCACACTACCAACCTTTCGCCACTGAGCCGAGCTATTTTGCTTTCTGAACCTATCGAGCTTTATCATTATATGCTTGCCAAAGCTTTAGCCAATTGCTTTGAATCCAAGTTACTCTATCTAGATATTGATTACTTCTCTCTGAAGATGCAGGACAAAGATGGATGTTCTACAAAAGAACCACATTTAAAAAGGTCCATATTTGAGGCGACTTGGGAGAGTGTGTCTGGTTTATTTAGTCACCTGCTGATCCTCCCTTCAACAGGTGTAATTAGAGCTACTAAAGCTCCTTCGAAGTGCAAAAGCCAGGACTGTTTTAATGAAAAGCTTTTTCTATATTCACTCTACAAGGTCTTGGTTTCTTTATTAGAAACTGGTTCTGTCATTTTATACATCAAGAATGTTGAGAAGATCTTTCTTCGATCACCAAGGATATACATTTTGTTCAAAAAGCTATTCGATAAACTTTCAGGACCAGTGTTGATACTCGGTTCTAGGTCAGATGATTTAAAAGATAGCTATACAGAAATCAATGAAAAACTCACTATGTTATTCCCTTACAATATTGAGATTAAACCGCCTCAGGATAAGGCTCATCTCAAAATCTGGACAGAGCAACTAAAAAAGGCCATGGAAAAGACTTCTTTGGAAGATAAAGCCACCCACATTGCTGAAGTGTTTGCAAAAAATGGCATCGATTATAATATCTTGCATTCAGTTAGCGGTACTGACATGATGCTACTTAGTAAACACACCGAAGAGATTGTGGCATCTACAATTTTTTATCACTTGAAGAATACTGAAAATCCAGAGTACCGAAATGGAATCCTAACTATATCGGCCACGAGTTTGTGCCATGTAATGAGCCTTTTTAAGGAGGGTGAAAGTGGTGAAAAGGATGAAAACAACACTGAAAAAGAATCAAAAAAGGATGATGCTGGAAAAGATAAACCTGTATCAAACGGGGCACAGAAAGACAAGGATATTAAACCTATTTCAAACGGAACAAAGAAAGACAGTGATACTAAAGCTGCTTCAAACGGGACAAAGAAAGACAGTGATATTGAAGCTACTACAAAACCTAATGATCCTCCTGACAACTCCTATGAGAAGTTAATAAGACAAGAGCTTATTTCTGCAAATGAGATAAAGGTGAGTTTTTCAGATATTGGTGCATTGGATGATGTTAAGGAATCACTTCAAGAAGCGGTTATGCTTCCCCTTAGAAGACCAGATCTATTCAAAGGCGGTGGGTTATTGAAGCCATGTAAAGGTGTATTGCTTTTTGGACCTCCCGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATATCTCTTCGTCTACCATCACTGGTATGTGGTTTGGACAAAGTGAAAAGAATGTTCGGGCTCTGTTTTCGTTAGCGGCAAAGGTTGCCCCGACTATTATTTTCGTTGATGAAGTTGATAGCTTGCTTGGGAGGCGGACTATGAATGAGCAAGACGTTGTGAGAAGTATTAAAAATGAATTCATGACCCATTGGGATGGACTTTTGTCAAAACCTGATGAGAAAATTATTGTTCTTGCTGCAACCAACATGCCATTTGCCCTTGATGAAGCAGTTATAAGACGGTTTCAGCGCAGGATCATGGTTGGTCTTCCATCTGCTGAAAACAGAGAAGTGATCTTGAAAACTCTTCTAGCTAAGGATAAACTTGAAGATATAGACTTCAAAGAGCTTTCAACTAAGACAAAAGGATATAGTGGGAGTGATCTTAAGAACTTGTGCATGACTGCAGCATATCGTCCTCTTAAGGAGCTAATGCAACAGGAGAAGGCCAAAGAAATGAAAAAGAAGAAAAAAGAGGCAGAAGCTGAAATCTCAAAAGTTGCCTCCAATGCTACGGAAGAAGATCCAGTGATTGCCCTTAGGCCTTTAAACATGGAAGACATGAGAGATGCAAAGAATAAGGTGACTCCAAGCTTTGCTGAAGAAGGATCAAATATGAAAATGCTAGAGCAGTGGAATGATTTGTATGGAGCAGGAGGAGGTTCAAGGAAGAAGAAAAAAGAGCAGCTTACTTATTTCTTATAG 2307 0.3862 MGKIVGIGSVSESNQISQDPFMEFLMEQVIEGKDSDVTFDNFPFYLSERIKILLTSAGYFHLRQHDLSNHTTNLSPLSRAILLSEPIELYHYMLAKALANCFESKLLYLDIDYFSLKMQDKDGCSTKEPHLKRSIFEATWESVSGLFSHLLILPSTGVIRATKAPSKCKSQDCFNEKLFLYSLYKVLVSLLETGSVILYIKNVEKIFLRSPRIYILFKKLFDKLSGPVLILGSRSDDLKDSYTEINEKLTMLFPYNIEIKPPQDKAHLKIWTEQLKKAMEKTSLEDKATHIAEVFAKNGIDYNILHSVSGTDMMLLSKHTEEIVASTIFYHLKNTENPEYRNGILTISATSLCHVMSLFKEGESGEKDENNTEKESKKDDAGKDKPVSNGAQKDKDIKPISNGTKKDSDTKAASNGTKKDSDIEATTKPNDPPDNSYEKLIRQELISANEIKVSFSDIGALDDVKESLQEAVMLPLRRPDLFKGGGLLKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINISSSTITGMWFGQSEKNVRALFSLAAKVAPTIIFVDEVDSLLGRRTMNEQDVVRSIKNEFMTHWDGLLSKPDEKIIVLAATNMPFALDEAVIRRFQRRIMVGLPSAENREVILKTLLAKDKLEDIDFKELSTKTKGYSGSDLKNLCMTAAYRPLKELMQQEKAKEMKKKKKEAEAEISKVASNATEEDPVIALRPLNMEDMRDAKNKVTPSFAEEGSNMKMLEQWNDLYGAGGGSRKKKKEQLTYFL 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02845 768 MobiDBLite consensus disorder prediction 362 427 - -
Vifa3g02845 768 Coils Coil 675 704 - -
Vifa3g02845 768 Pfam AAA+ lid domain 645 688 IPR041569 -
Vifa3g02845 768 Pfam ATPase family associated with various cellular activities (AAA) 494 623 IPR003959 GO:0005524|GO:0016887
Vifa3g02845 768 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 452 627 - -
Vifa3g02845 768 Gene3D - 625 729 - -
Vifa3g02845 768 MobiDBLite consensus disorder prediction 362 436 - -
Vifa3g02845 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 680 IPR027417 -
Vifa3g02845 768 SMART AAA_5 490 626 IPR003593 GO:0016887
Vifa3g02845 768 Gene3D - 452 747 IPR027417 -
Vifa3g02845 768 ProSitePatterns AAA-protein family signature. 596 615 IPR003960 GO:0005524|GO:0016887
Vifa3g02845 768 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 22 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02845 Vifa-Chr3 798808703 798812850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02845 452 683 Calmodulin-binding Proteins AT3G56690 40.506 1.63e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02845 - - mtr:11428492 947.192