LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g02844	ATGGGAAAAAAGGTTTGGATTGGAAGTGATTCTAAGTCTAATCAGATTTCTCAGAATCAGTTTATGGAGGACCTGATGAAACAAGTCATTGATGGAAAAGACACTGAAGTCACATTTGATAACTTGCCTTTTTACTTAAATGAAAGGATCAAAATTTTGTTGGCAACTATTTTGCTTTCTGAACCTATCGAGCTTTATCATCATATGCTTGCCAAAGCTTTAGCCAATTGCTTTGAATCGAAGTTGCTGTGTCTAGATATTGATTACTTCTCTTTGAAGATGCTGCAGGGCAAAGATGGATGTTCTACAAAAGAACCACATTTAAAAAGGTCCATATTTGAGGCGACTCAGGAACGTGTATCTAGTTTATTTAGTCGTCTGCCACTCCACCCTTCAACAGATGTGATTAGAGGTACAAAAGGAAGTAGCAAAAGTTCAACAAATGTGATTAGAGCTACAAAAGGAAGTAGCAAAAGCTGGGACTGTTTTGATGAAAAGCTTTTTCTAGATTCACTCTACAAGGTCTTGGTTTCTTTATTAGAAACTGGTTCTGTCATTTTATACATCAAGAATGTTGAGAAGATCTTTCTTCGATCACCAAGGATGTGCATTTTGTTCAAAAAGCTATTCGATAAACTTTCGGGACCAGTGTTGATACTCGGTTCTAGGTCAGATGATTTAAAAGATAATTGTACAGAAATCAATGAAAAACTCACTATGTTATTCCCTTACAATATTGAGATTAAACCGCCTCAGGATAAGGCTCATCTCAAAATCTGGACAGAGCAACTAAAAAAGGCCATGGAAAAGACTTCTTTGGAAGATAAAACCACCCGCATTGCTGAAGTGTTTGCAAAAAATGGCATCGATTGTAATATCTTGGATTCAGTTAGCGGTACTGACATGATGCTACTTAGTAAACATACCGAAGAGATTGTGGCATCTACAATTTTTTATCACTTGAAGAATACTGAAAATCCAGAGTACCGAAATGGAATCCTAACTATATCGGCCACGAGTTTGTGCCATGTATTGAGCCTTTTTAAGGAGGGTGAAAGTGGTGAAAAGGATGAAAACAACACTGAAAAAGAGTCAAAAAAGGATGATGCTGGAAAAGATAAACCTGTATCAAACGGGGCACAGAAAAACAAGGATATTAAACCTATTTCAAACGGGACAAAGAAAGACAGTGATACTAAAGCTGTTTCAAACGGGACAAAGAAAGACAGTGATATTAAAGCTATTTCAAACGGGACACATAAAGACAATGATATTAAAGCTGTTTCAAACGGGACAAAGAATAACGGTGATAACGCGACAAAGAAAGACAGTGATATTAAAGATACTACAAAACCTAATGTTCGTCCTGACAACTCCTATGAGAAGTTAATAAGACAAGAGCTTATCCCTGCAAATGAGATAAAGGTGAGTTTTTCAGATATTGGTGCATTGGATGATGTTAAGGAATCACTTCAAGAAGCGGTTATGCTTCCCCTTAGAAGACCAGATCTATTCAAAGGCGGTGGGTTATTGAAGCCATGTAAAGGTGTATTGCTTTTTGGACCTCCCGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCTTCGTCTACCATCACTGCTAAGTGGTTCGGACAAAGTGAAAAGAATGTTCGAGCTCTGTTTTCATTAGCGGCAAAGGTTGCCCCGACTATTATTTTCATTGATGAAGTTGATAGCTTGCTTGGGAAGCGGACTATGAATGAGAATAGCGTTTTGAGAAGGATTAAAAATGAATTCATGACCCATTGGGATGGACTTTTGTCAAAACCTGATGAGAAAATTATTGTTCTTGCTGCAACCAACATGCCATTTGCCCTTGATGAAGCAGTTATAAGACGGTTTCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAAAACAGGGAAATGATCTTGAAAACTCTTCTAGCTAAGGAAAAACATGAAGATATAGACGTCAAAGAGCTTTCAACTATGACAAAAGGATATAGTGGGAGTGATCTTAAGAACTTGTGCATGACTGCAGCATATCGCCCCCTTAAGGAGCTAATGCAACAGGAGAAGGCCAAAGAAATGAAAAAGAAGAAAAAAGAGGCAGAAACTGAAACCTCACAAGTTGCCTCCAATGCTACGGAAGAAGATCAAGTGATTGTCCTCAGGCCTTTAAACATGGAAGACATGAGAGATGCAAAGAATAAGGTTAGTTCAAGCTTTGCTGAAGAAGGATCAAATATGAAAAAGTTAGAGCAGTGGAATGATTTGTATGGAGCTGGAGAAGGCTTAAGGAAGAAAAAGGAGCAGCTCAGTTATTTCTTTTAG	2373	0.3822	MGKKVWIGSDSKSNQISQNQFMEDLMKQVIDGKDTEVTFDNLPFYLNERIKILLATILLSEPIELYHHMLAKALANCFESKLLCLDIDYFSLKMLQGKDGCSTKEPHLKRSIFEATQERVSSLFSRLPLHPSTDVIRGTKGSSKSSTNVIRATKGSSKSWDCFDEKLFLDSLYKVLVSLLETGSVILYIKNVEKIFLRSPRMCILFKKLFDKLSGPVLILGSRSDDLKDNCTEINEKLTMLFPYNIEIKPPQDKAHLKIWTEQLKKAMEKTSLEDKTTRIAEVFAKNGIDCNILDSVSGTDMMLLSKHTEEIVASTIFYHLKNTENPEYRNGILTISATSLCHVLSLFKEGESGEKDENNTEKESKKDDAGKDKPVSNGAQKNKDIKPISNGTKKDSDTKAVSNGTKKDSDIKAISNGTHKDNDIKAVSNGTKNNGDNATKKDSDIKDTTKPNVRPDNSYEKLIRQELIPANEIKVSFSDIGALDDVKESLQEAVMLPLRRPDLFKGGGLLKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSSSTITAKWFGQSEKNVRALFSLAAKVAPTIIFIDEVDSLLGKRTMNENSVLRRIKNEFMTHWDGLLSKPDEKIIVLAATNMPFALDEAVIRRFQRRIMVGLPSAENREMILKTLLAKEKHEDIDVKELSTMTKGYSGSDLKNLCMTAAYRPLKELMQQEKAKEMKKKKKEAETETSQVASNATEEDQVIVLRPLNMEDMRDAKNKVSSSFAEEGSNMKKLEQWNDLYGAGEGLRKKKEQLSYFF	790

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g02844	790	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	474	703	IPR027417	-
	Vifa3g02844	790	Pfam	AAA+ lid domain	668	711	IPR041569	-
	Vifa3g02844	790	MobiDBLite	consensus disorder prediction	422	437	-	-
	Vifa3g02844	790	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	475	652	-	-
	Vifa3g02844	790	Gene3D	-	648	752	-	-
	Vifa3g02844	790	MobiDBLite	consensus disorder prediction	352	380	-	-
	Vifa3g02844	790	MobiDBLite	consensus disorder prediction	352	459	-	-
	Vifa3g02844	790	SMART	AAA_5	513	649	IPR003593	GO:0016887
	Vifa3g02844	790	Pfam	ATPase family associated with various cellular activities (AAA)	517	646	IPR003959	GO:0005524\|GO:0016887
	Vifa3g02844	790	MobiDBLite	consensus disorder prediction	705	720	-	-
	Vifa3g02844	790	Coils	Coil	698	727	-	-
	Vifa3g02844	790	ProSitePatterns	AAA-protein family signature.	619	638	IPR003960	GO:0005524\|GO:0016887
	Vifa3g02844	790	Gene3D	-	475	770	IPR027417	-
	Vifa3g02844	790	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	21	789	-	-
	Vifa3g02844	790	MobiDBLite	consensus disorder prediction	438	459	-	-
	Vifa3g02844	790	MobiDBLite	consensus disorder prediction	388	420	-	-
	Vifa3g02844	790	MobiDBLite	consensus disorder prediction	705	729	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g02844	Vifa-Chr3	798498412	798502786	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g02844	412	726	Calmodulin-binding Proteins	AT3G56690	34.524	1.20e-46	177

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g02844	-		-	mtr:11428492	887.871