Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02839 ATGGCTTCTTCATTCATGCATTATTGGATTGTGGTTACTGTGTTCTTGAGTTGTTCCAATGATTGCATTTCGAGTAAGATTGAGTTGGGCTCAAGATTATTGGCTAGTAAGAATCAAGTTTGGGTTTCTGATAACGGAACATTCAGTATCGGCTTCACTCCATCAGACACTGATAATCGATTATTCACGTTAGGCATTTGGTTTGCTAGCCTTCCGGGAGATCGAACTTTCGTTTGGTCACCCAATAGAAACTCACCTACATCTCAAGAAGCAATTTTGGAGCTTGACACAACAGGAAACCTCGTCCTCGTCGACAAAAAAGTCACGATATGGGCCTCAAACACATCAAATGCTAATGTAGAATCAGCAACCATGTCAGAATCTGGTAACTTCATCCTTCACAGCACAAACAACCACCCTATATGGCAGAGTTTTTCTCAACCTTCAAACACACTTCTCCCAAACCAGCCTCTAACAGTTTCTTCAGAATTAACATCATCAAAATCTTCATCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAGCAACCAACTTCTTTAAGTCTTGCACTAACTTACAATCTTCCAGAAAGTTACCAAACTTTTGATGAAAATGAATCATATGCAAACTATTCTTATTGGCAAGGTCCTGATATTTCCAATGTAACCGGAGAAGTTATCGCGGTTTTAGATCAATCCGGAAGCTTTGGAATTGTATATGGAAATTCATCTGATGGTGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACACCGTTAACCGTTCTTAGGAGACTGACACTCGAAGAGAATGGAAATCTGAGGTTATACCGATGGGAAGACGTAAATGGATCGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGAGTATGTAAATTGGATAAAACTAAGACTAATGCTTCTTGCACTTGTTTACCAGGAACTTCTAAAGTAGGAAGAGATGGACAATGTTATGAGAATTCATCTCTGGTTGGAAAATGTACTAATGGAAAAAACGAAAACAAGACATCGAGTTTTAGAATTTCGACAGTGCAACAAACTAATTATTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGCGATGCATGTTTGTCCGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTCGGCGGTTTTGAAGATACGAGCTCTACTTTGTTTGTGAAGGTTCGAGCAAATAGTTCATGGACACAAGAAGGACAAGAGGGAAGGTCTAATAACAGTTCTTCTGATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTCACTATGTTACTGTATTACAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAGATGGAATGTTCATTGGTCTTATCAGGTGCTCCAGTGAATTTTACTTACCGCGCTTTGCAGATCAGGACAAGTAACTTTTCGCAGCTTCTAGGAACAGGTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTCGCGGTGAAGAAACTTGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACCGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTGGTTCGTTTATGTGGTTTTTGTTCCGAGGGACCTCAGAGGCTTTTAGTTTATGAGTTCATGAAGAATGGTTCATTGGATCAGTGGATCTTCCCTTCGATTCGAGGACAAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCAAAAATACCGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGAAACAAGATAATACACTGTGACATCAAGCCAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTGGTAACAATGGTAAGAGGCACTAGAGGCTATTTGGCACCAGAATGGGTTAGTAATCGACCGATAACCGTAAAAGCAGATGTTTACAGCTATGGAATGCTTCTTTTAGAAATCATTGGTGGTAGAAGAAATCTTGATTTGTCTTTTGATGCAGAAGATTTCTTCTATCCTGGTTGGGCTTACAAGGAGATGACAAGTGGATCAACCATCAAAGTGGCAGATAGAAGATTAAATGGGGCCGTTGATGAAGAACAACTAACAAGAGCTTTGAATGTTGCTTTTTGGTGCATCCAAGATGATGTTTCAATGCGACCACCAATGGGAGAAGTGATGAGAATGCTTGAAGGTCAAGAATCAAATATCATAAATATGCCACCAATGCCACAAACAGTACTAGAGTTAATTGAAGAAGGGTTGGATCATGTCTACAAAGCTATGAAAAGAGAGTATAATCACTATAGCTCATTCACCATTACTAGTCATCTTACATCTCATGCAATATGTAGCAATTCCACAATGTCACCAAGATAG 2604 0.3859 MASSFMHYWIVVTVFLSCSNDCISSKIELGSRLLASKNQVWVSDNGTFSIGFTPSDTDNRLFTLGIWFASLPGDRTFVWSPNRNSPTSQEAILELDTTGNLVLVDKKVTIWASNTSNANVESATMSESGNFILHSTNNHPIWQSFSQPSNTLLPNQPLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPESYQTFDENESYANYSYWQGPDISNVTGEVIAVLDQSGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDVNGSKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKVGRDGQCYENSSLVGKCTNGKNENKTSSFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANSSWTQEGQEGRSNNSSSDGMGSAKEKAVIIPIVLGMIVLIILLTMLLYYSVHRKRTLKREMECSLVLSGAPVNFTYRALQIRTSNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGQDRLLDWQTRFDIAKNTAQGIAYFHEQCRNKIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDLSFDAEDFFYPGWAYKEMTSGSTIKVADRRLNGAVDEEQLTRALNVAFWCIQDDVSMRPPMGEVMRMLEGQESNIINMPPMPQTVLELIEEGLDHVYKAMKREYNHYSSFTITSHLTSHAICSNSTMSPR 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02839 867 Gene3D Transferase(Phosphotransferase) domain 1 609 817 - -
Vifa3g02839 867 SUPERFAMILY Protein kinase-like (PK-like) 513 807 IPR011009 -
Vifa3g02839 867 PANTHER OS07G0415500 PROTEIN 8 819 - -
Vifa3g02839 867 Pfam D-mannose binding lectin 76 163 IPR001480 -
Vifa3g02839 867 Pfam S-locus glycoprotein domain 256 337 IPR000858 GO:0048544
Vifa3g02839 867 ProSiteProfiles Protein kinase domain profile. 533 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02839 867 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 609 817 - -
Vifa3g02839 867 Gene3D - 22 147 IPR036426 -
Vifa3g02839 867 Gene3D Phosphorylase Kinase; domain 1 497 608 - -
Vifa3g02839 867 PIRSF SRK 1 855 IPR024171 GO:0004674
Vifa3g02839 867 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 150 IPR036426 -
Vifa3g02839 867 FunFam Serine/threonine-protein kinase 28 146 - -
Vifa3g02839 867 CDD B_lectin 36 148 IPR001480 -
Vifa3g02839 867 SMART serkin_6 533 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02839 867 CDD STKc_IRAK 539 807 - -
Vifa3g02839 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Vifa3g02839 867 ProSitePatterns Protein kinases ATP-binding region signature. 539 562 IPR017441 GO:0005524
Vifa3g02839 867 FunFam S-receptor-like serine/threonine-protein kinase 502 608 - -
Vifa3g02839 867 Pfam Protein kinase domain 536 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02839 867 SMART blect_4 32 148 IPR001480 -
Vifa3g02839 867 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02839 Vifa-Chr3 797574252 797577372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02839 479 817 Receptor kinase-like Gene Family AT5G20050 41.873 1.21e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa3g02839 Pkinase 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02839 - - tpra:123904109 1555.42