Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02831 ATGGCGAAGGGTCCAGGTCTCTACTCTGACATCGGCAAGAAAGCCAGAGATCTTTTGTTCAAGGATTACAACACTGACCAGAAGTTTACTCTCACTACTTATTCACCTAATGGAGTTGCTATAACCACCTCAAGTACCAAAAAGGGTGAGGTTTTTGTGGCTGATGTTAACACACAGTTGAAGCACAAGAATGTAACTACTGATGTCAAAAGGAAACACAGCAGCTTCTGCATCTTCCACCATTTCAGAATGGTCAAGGGTAGACAGGGAGAACGCATTAGGCTTTATGTCAGGGGTACAGTTCTTGGATACAAAAGGTCAAAGTCAAATCAATACCCAAACACCTCTCTTGTTCAGATCGAGGGAGTAAACACAAAGGAAGAGGTTGCATGGTATGCTAGGAAACGGTTGGCATACATTTACAAGGCCAAGGTTAAAAGGGATGGTAGCCACTATAGGTGTATCTGGGGAAAGGTTACTAGACCTCATGGTAACAGTGGGGTAGTCCGTGCAAAGTTCACTTCAAATTTGCCACCAAAATCCACTACTACTGTTACGGAGAAAAGAGAAGACGAAGCAATAAGCAAACCATGCAGCAGAGAACCAACAACGACGACTCACAAGTGGAATCGATCTCCATCAAGAAAGCGTCCTGTCGTAGCTGATGCAAACGTCAGCGGTGGAAATGAGCGAAGGATTAAATCACCGGCTAGAAGACCGTCCCCGTCGCCGGAGAAGAAAATGAAGAACGGGTCAAGGTTAGTTCGTGGAAGAGAATCTGGTTCCATTGCAAACCGTAAAGTCAATGCAGGTCCAACCGGTGTTCGCCGTGACTCCGGTGAGGGTTCCGGCAGGAGGTCGAGGTCTCCTTCGTGTTCTCGTACAGTTGGAGTGTCGAGTAAAATAGGTGTCGGAGTTGGTCGGTAA 927 0.4649 MAKGPGLYSDIGKKARDLLFKDYNTDQKFTLTTYSPNGVAITTSSTKKGEVFVADVNTQLKHKNVTTDVKRKHSSFCIFHHFRMVKGRQGERIRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTKEEVAWYARKRLAYIYKAKVKRDGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSTTTVTEKREDEAISKPCSREPTTTTHKWNRSPSRKRPVVADANVSGGNERRIKSPARRPSPSPEKKMKNGSRLVRGRESGSIANRKVNAGPTGVRRDSGEGSGRRSRSPSCSRTVGVSSKIGVGVGR 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02831 308 Gene3D Porin 1 81 IPR023614 -
Vifa3g02831 308 Pfam Eukaryotic porin 4 70 IPR027246 GO:0005741|GO:0055085
Vifa3g02831 308 Pfam Ribosomal protein L35Ae 95 183 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa3g02831 308 SUPERFAMILY Translation proteins 95 182 IPR009000 -
Vifa3g02831 308 ProSitePatterns Ribosomal protein L35Ae signature. 157 178 IPR018266 GO:0003735|GO:0005840|GO:0006412
Vifa3g02831 308 MobiDBLite consensus disorder prediction 169 183 - -
Vifa3g02831 308 PANTHER 60S RIBOSOMAL PROTEIN L35A 85 183 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa3g02831 308 MobiDBLite consensus disorder prediction 232 254 - -
Vifa3g02831 308 Gene3D translation elongation factor selb, chain A, domain 4 90 187 IPR038661 -
Vifa3g02831 308 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 97 189 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa3g02831 308 MobiDBLite consensus disorder prediction 165 308 - -
Vifa3g02831 308 FunFam 60S ribosomal protein L35a 90 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02831 Vifa-Chr3 795151513 795152439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02831 84 182 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 88.889 2.24e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02831 K02917 - pop:7494468 197.978