Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02824 ATGACCGGGTTTTGGAATGTGTTATGCAGTGAATCTGTTTGTTCAAAGTCTTGCAGTATTTATGATGTTAAGTTTCTGATTGATCCTTCCACATGTGTCAACCATTTCTTAATATCTTGCTTTGATGTGCTTTTTCTCATCGTGCTCCTATTTGTAATGATGATCCACAAATCGTCATTAAAACCATATCAGGGTCTCATACATAGGGAAAGATATTCAAATCTGCAAATACTTTCTGCCATAACCAATGGTGTTCTTGGGTTGGCGCATTTGTTCTTTGGCATTTGGATTTTAGAAGAGAAGTTGAGGAAAAACCAAACTGCGTTGCCTCTTGATTTGTGGTTGCTGGAATTCTTTCAGGGATTAACATGGATGTTAGTTGGTTTAACATTAAGTCTTAAGTTTAAACAACTTCCAAAAGCATGGTTAAGGTTCTTTTCTATTCTAATCTTCTTAGTTTCTGGTATAAACTGTGCCATATCCTTGTTTTATGTAATCGGAAGTATACACTTGTCCTTCAAAGTAGGAATGGATGTTCTATCTTTTCCTGGGGCAATTTTATTGCTACTATGCACATATAACGAATCTAAGTGTAGCGACACTGTCAGAGAAATCAATGAAAGCCTTTACGCTTCTTTAAATGATGAGTCGAATAAAGATGATTCTGTTAGCCGTGTGACGCTATTTGCAAATGTTGGATTCTTCAATAGGATGTCATTTTGGTGGTTGAATTCATTGATGAAGAAAGGTAAAGAGAAAACACTTCAGGATGAAGATGTGCCGAAGCTGAGGGAGGAAGATAGAGCAGAAAGTTGTTATTCGATGTTTCTAGAGCAATTAAACAAGCAAAAACAGAAGGATCCATCCTCACAACCATCTGTTTTGAAGACAATGGTTTTATGCCATTGGAAAGAAATTTTGATATCTGGATTCTTTGCAATGCTTAAGGTACTTGCACTTTCTTCTGGACCTATGTTTCTGAATTCCTTTATATTAGTCGCTGAGGGTTATGAGAGTTTCAAATATCAAGGTTTTGTGTTAGCCATAGCACTTTTCTTGATAAAAATTATAGAATCTCTATCACAAAGGCAGTGGTATTTCCGGTCGAGACTCATAGGTCTCAAAGTTAAGTCGCTGCTAACAGCAGCCATATATAAAAAACAGTTGAGGTTATCAAATTCTGCGAGATTGATGCACTCTAGTGGTGAGATAATGAATTATGTAACCGTGGATGCTTATAGAATCGGAGAATTTCCTTACTGGTTTCACCAAACATGGACAACAAGCTTCCAGCTATGCATCTCATTGGTAATACTTTTCCGTGCAGTTGGGCTAGCTACAATTGCATCCTTGGTTGTGATAGTTATCACTGTTCTTTGCAATACACCACTAGCAAAGTTACAACACAAGTTTCAAAGCAAACTAATGGTTGCACAAGATGAGAGATTGAAGGCTACTTCCGAGGCTCTTGTGAATATGAAGGTACTGAAATTGTATGCATGGGAAACCAGATTTAAAAACTCTATAGAAGGCTTAAGGAATGAGGAACTCAAATGGTTGTCTGCAGTGCAATTGAGAAAGGCATACAATACATTTCTCTTTTGGTCGTCACCGGTTTTGGTCTCTGCTGCTACGTTCGGAGCGTGTTATTTTCTTAATGTGCCATTGCATGCGAATAATGTTTTCACTTTCGTGGCAACTTTGCGCCTTGTTCAAGATCCAATTAGAACCATCCCTGATGTTATTGGGGTGGTTATTCAGGCAAAAGTTGCATTCACTCGGATTCTAAAATTCCTGGAGGCACCCGAACTGCAGAGTGAAAATATTGGGAAGAGGTGTTCAGAAGACAATATAAGGGGTTCAATTTCAATCAAGTCTGCTAAATTTTCATGGGAGGATAATAACGTGTCAAATCCGACATTGAGAAATGTTAATCTGGAAGTAAGACCTGGACAAAAGGTCGCAATTTGTGGCGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTATCACTCAAGGGAAAATTGATGTTTATGGGAAGTTTGCGTATGTTTCTCAAACAGCATGGATACAAACAGGTTCGGTAAGGGATAATATATTGTTTGGATCATCTATGGATGTTCAAAAATATCAGGAAACTCTTCATAGGTCTTCACTAGTAAAAGATCTTGAGCTGTTTCCTCATGGTGATCTCACTGAAATAGGAGAGAGAGGGGTTAACTTAAGTGGTGGTCAGAAGCAACGAATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATATATATCTTTTGGATGATCCATTCAGCGCTGTTGATGCACAAACTGCCACAAATTTGTTTAATGAATACATTATGGAAGGACTTGCTGGGAAGACAGTTTTGCTTGTGACCCATCAAGTTGACTTCCTTCCAGCATTTGATTTTGTTTTGTTGATGTCAGACGGCAAAATTTTACAAGCTGCTTCGTATCACCAATTGTTGACCTCAAGCAAAGATTTTCAGGACCTTGTGAATGCTCACAAAGAGACTGCTGGTTCTGACCGGCTTGGGGATGTTACTTCTTTTGAAAGAAATTCAAATTCTGCCAAAGAGATAAGGAAAACATATGTGGAGAAGGAAAAGCAATTCGAAGCACCAGAAGGAGATCAATTGATTAAGCAAGAAGAGAGAGAAACTGGAGACCAGGGGCTTACGCCTTACTTAACTTACCTGAATCAGAACAATGGATACATATACTTCTCCGTGGCTTCTATTTCTCATCTTATATTTGTGATCGGTCAAATATTGCAAAATTCGTGGATGGCTGCTAATGTTGACAATCCTAAAGTCAGCACTTTGAGACTGATTCTAGTTTACTTGTTAATTGGAGTTACTTCAACAGTGTTCTTATTGATGAGAAGCCTTTTTACAGTTGCTTTGGGCCTTCAATCTTCAAAGTCTTTATTTTTACAGCTACTAAACTCCCTTTTTCGTGCACCTATGACGTTTTATGATTCCACACCTTTGGGACGGATACTTAGTAGGGTCTCTTCTGATCTCAGCATTGTTGACCTTGATGTTCCATTTGGTCTTCTTTTCGCCGTGGGAGCTACTAGCAATTGTTATGCTAGTCTAACTGTTTTAGCAGTAGTTACTTGGCAAGTCTTGTTTGTCTCCATACCGATGCTCTATTTTGCACTGCGGTTGCAGAGATACTACTTTGCTTCAGCAAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAACCATCTTGCTGAATCAGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAAGAGGAAGATCGTTTTTTCGTAAAGAACCTTGATCTAATCGATATCAATGCTACTCCTTTCTTTCATAGTTTTGCTGCAAATGAGTGGTTGATTCAACGGTTAGAAACAGTCAGTGCTGTTGTTCTTGCATCTGCCGCACTGTGTATAGTTATACTTCCACCCGGAACATTTTCCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCCCTTAATGCTTCCTTAGTATTTTCAATTCAAAATCAATGCAATATAGCAAATTACATAATATCAGTGGAGAGGCTAAATCAATATATGCATGTACCAAGTGAGGCTCCTGAAGTAATAGAAGGAAATCGCCCTCCGGTGAATTGGCCAGTTGTTGGTAGAGTAGAAATAAAGGAACTCAAGATACGGTACAGGCTTGATGCACCACTAGTACTCCGCGGAATCACGTGCACATTTGAAGGAGGACACAAAATCGGTATAGTTGGTCGAACAGGAAGCGGCAAGACCACTCTTATTGGTGCTTTATTTCATCTAGTCGAGCCATCAGGTGGAAAAATCATTGTTGATGGCATTGACATTTGTTCTATTGGACTTCATGATTTGAGGTCGCGCTTTGGTATTATACCTCAGGATCCTACTCTTTTTAATGGAACAGTCCGATACAATTTGGACCCCTTATTTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGCAAGTGTCAGTTGCAAGAGGTTGTCCAAGAGAAAGAAGGTGGCTTAGACTCATCAGTTGTTGAAGATGGGGCAAATTGGAGCATGGGACAACGACAATTGTTCTGTTTGGGCCGTGCTTTGCTGAGGAAAAGTCGGGTATTGGTGCTCGATGAAGCAACTGCATCAATTGATAATGCAACAGACTTGATTCTGCAGAAAACTATTAGGACCGAATTTGCAGATTGTACGGTAATCACAGTAGCTCACAGGATACCGACCGTGATGGATTGCACAAAGGTTCTTTCCATCAGTGATGGAAATTTAGTAGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGATCTTTGTTTGGGAAGCTTGTCAAAGAATACTGGTCTCATTTTCAATCTGCAGAGTCTCATTAA 4443 0.3948 MTGFWNVLCSESVCSKSCSIYDVKFLIDPSTCVNHFLISCFDVLFLIVLLFVMMIHKSSLKPYQGLIHRERYSNLQILSAITNGVLGLAHLFFGIWILEEKLRKNQTALPLDLWLLEFFQGLTWMLVGLTLSLKFKQLPKAWLRFFSILIFLVSGINCAISLFYVIGSIHLSFKVGMDVLSFPGAILLLLCTYNESKCSDTVREINESLYASLNDESNKDDSVSRVTLFANVGFFNRMSFWWLNSLMKKGKEKTLQDEDVPKLREEDRAESCYSMFLEQLNKQKQKDPSSQPSVLKTMVLCHWKEILISGFFAMLKVLALSSGPMFLNSFILVAEGYESFKYQGFVLAIALFLIKIIESLSQRQWYFRSRLIGLKVKSLLTAAIYKKQLRLSNSARLMHSSGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFRAVGLATIASLVVIVITVLCNTPLAKLQHKFQSKLMVAQDERLKATSEALVNMKVLKLYAWETRFKNSIEGLRNEELKWLSAVQLRKAYNTFLFWSSPVLVSAATFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFTRILKFLEAPELQSENIGKRCSEDNIRGSISIKSAKFSWEDNNVSNPTLRNVNLEVRPGQKVAICGEVGSGKSTLLAAILREVPITQGKIDVYGKFAYVSQTAWIQTGSVRDNILFGSSMDVQKYQETLHRSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAQTATNLFNEYIMEGLAGKTVLLVTHQVDFLPAFDFVLLMSDGKILQAASYHQLLTSSKDFQDLVNAHKETAGSDRLGDVTSFERNSNSAKEIRKTYVEKEKQFEAPEGDQLIKQEERETGDQGLTPYLTYLNQNNGYIYFSVASISHLIFVIGQILQNSWMAANVDNPKVSTLRLILVYLLIGVTSTVFLLMRSLFTVALGLQSSKSLFLQLLNSLFRAPMTFYDSTPLGRILSRVSSDLSIVDLDVPFGLLFAVGATSNCYASLTVLAVVTWQVLFVSIPMLYFALRLQRYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFVKNLDLIDINATPFFHSFAANEWLIQRLETVSAVVLASAALCIVILPPGTFSSGFIGMALSYGLSLNASLVFSIQNQCNIANYIISVERLNQYMHVPSEAPEVIEGNRPPVNWPVVGRVEIKELKIRYRLDAPLVLRGITCTFEGGHKIGIVGRTGSGKTTLIGALFHLVEPSGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLFQHSDQEIWEVLGKCQLQEVVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRKSRVLVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGNLVEYDEPMNLMKREGSLFGKLVKEYWSHFQSAESH 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02824 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 928 1197 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02824 1480 Gene3D - 1218 1469 IPR027417 -
Vifa3g02824 1480 Pfam ABC transporter transmembrane region 306 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02824 1480 Pfam ABC transporter transmembrane region 919 1159 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02824 1480 SUPERFAMILY ABC transporter transmembrane region 921 1214 IPR036640 GO:0005524|GO:0016020
Vifa3g02824 1480 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Vifa3g02824 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 604 846 IPR003439 GO:0005524
Vifa3g02824 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1461 IPR027417 -
Vifa3g02824 1480 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Vifa3g02824 1480 FunFam ABC transporter C family member 3 1217 1469 - -
Vifa3g02824 1480 FunFam ABC transporter C family member 10 606 859 - -
Vifa3g02824 1480 SUPERFAMILY ABC transporter transmembrane region 295 600 IPR036640 GO:0005524|GO:0016020
Vifa3g02824 1480 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 230 1468 - -
Vifa3g02824 1480 Gene3D ABC transporter type 1, transmembrane domain 295 597 IPR036640 GO:0005524|GO:0016020
Vifa3g02824 1480 Gene3D - 598 865 IPR027417 -
Vifa3g02824 1480 SMART AAA_5 650 823 IPR003593 GO:0016887
Vifa3g02824 1480 SMART AAA_5 1260 1443 IPR003593 GO:0016887
Vifa3g02824 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02824 1480 FunFam ABC transporter C family member 5 883 1215 - -
Vifa3g02824 1480 Gene3D ABC transporter type 1, transmembrane domain 883 1215 IPR036640 GO:0005524|GO:0016020
Vifa3g02824 1480 Pfam ABC transporter 1251 1399 IPR003439 GO:0005524
Vifa3g02824 1480 CDD ABC_6TM_ABCC_D2 916 1209 IPR044726 GO:0140359
Vifa3g02824 1480 CDD ABCC_MRP_domain1 622 823 - -
Vifa3g02824 1480 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524|GO:0016887
Vifa3g02824 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1236 1468 IPR003439 GO:0005524
Vifa3g02824 1480 FunFam ABC transporter C family member 10 290 603 - -
Vifa3g02824 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 846 IPR027417 -
Vifa3g02824 1480 CDD ABCC_MRP_domain2 1232 1452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02824 Vifa-Chr3 794275541 794281436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02824 1230 1480 Calmodulin-binding Proteins AT2G36910 28.794 1.10e-26 117