Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02822 ATGCGTTATCACACTCTATTCATCCTCCATTTCTTTCTCTTCATCACTTTCATTCTCCCTTTACTTTCTCTCCCTTCACAAAACATCACACTCTTTGGTGATGCTTCTTTCACAGACACCTCCATTGCTCTCACCAAACAAAAACTCACTTGTCTTTCTTCTTCGTCTTCTGGAACGGGAAGAGCTTTCTACCTCTACCCTGTTCGTTTTCTTGATCCTTTAACAAACTCAACCGCTTCTTTTTCATGTCGTTTCTCTTTCTCAATCCATTCATCACCTTCCTGCCCTTCCTCTTCTGGTGACGGCATTGCTTTTCTCATTTCTTCAACCACTGATTTCTCCTCTCTCTCTAATGGTTACATGGGTCTTCCGAGTTCGGACAAAGATTCTTACTTTGCGGTTGAATTCGACACGAGTTTTGATCCTTCTCTTGGTGATATTGATGGTAACCATGTTGGTATTGATCTTAGCAGTGTTGTTTCTTTTGCTTCTGTTGATGTTCTTTCACGTGGGGTTGATTTGAAAAGTGGGAAAATCATCACTGCATGGATTGAGTATAGAGATGACATGAAAATGGTTCGTGTTTGGATTGGTTATTCGTCTACTAGGCCACCAACACCGATTCTTGCTTCACTCATTGATCTTTCTGAGATATTCAAAGAGTTTATGCATGTTGGTTTCTCGGCTTCTAATGGAAAAGGTTCAAGTATTCACCTTGTTCATCATTGGCAGTTCAAAACTTTGAGTTATTCTCATTCTGTTAGTCCTATGGACAATTTAGAAGAAGGTGATTGTTTCTTGTGCTACGCCGGCGATTCGAAAGCGTCCAAGAAAAAAGGTGAAAATTATCAAGGGAAGAAGATTGGTGATTTAGCTCTTGGAATCTGTGGAATAACAGCTTTTGTTGTGTCAGCATTGGCATTAGTTGTTGTGATATGTGTTTACATGAAAAGGAAAGAGGGGGGTGTAATTAGAAAGATTAGAGAAGGACAAAGTTGTAGATTTCAAACAAATAAAGTTCCAATGAGGTTAGCACTTTCAGAGATAACATCAGCTACAATGGGGTTTAATAGAGATAGACTAGTTGGTGAAGGTGCTTCTGCAAAAGTTTATAAAGGGTCACTTCCATTTGGAGGTGATGTAGCTGTCAAGAGATTCGAAAAAGTCGATGATTTGGATCGTTTACACAATCCTTTTGCAACAGAATTCGCTACAATGGTTGGTTGCTTGCGGCACAAGAATCTCGTTCAGCTCAAAGGATGGTGCTGTGAAGAGAATGAATTGGTTTTAGTTTATGAATATCTACCAAATGGAAGCCTAGATAAAGTTCTGCATAAGAATTTAAGATCTTCATTTGTGCTTTCATGGAAACAAAGAGTTAATATAATTCTCGGCGTCGCGGCTGCTCTTACCTATCTTCATGAAGAATGTGAGAGACAGATCATTCATAGAGATGTGAAGACATGTAACATAATGCTTGATGTAGATTTCAATGCAAAGTTAGGTGATTTTGGGCTTGCAGAAGTGTATGAACACAGTTCCAGCACAAGGGATGCTACTATACCAGCAGGAACAATGGGGTATCTAGCACCGGAATACGTTTATACCGGGATTCCTACCGTGAAGACCGATGTGTATAGTTTTGGAGTCGTGGTGATTGAAGTCGCGACGGGGAGGAAACCCGTTGGAGACGACGGAACTGTCGTAGGCGACTATGTTTGGAATCTGTGGGAAAAGAATAGGCTCGTGGACGCGGCGGATCCGAAACTGATGGGCGAATTCGATATTGTGGAGATGGAAAGGGTGTTATTGGTAGGGCTTGTTTGTGTTCATCCTGATAATGAAAAGAGGCCTAGAGTGAGGGATGCAGCTAGGATGATTAAGAATGAAGCATCAGTTCCTTTGTTGCCACCATGTAAACCAAGGGTGAGGATTAGGCCTATTTATCCTGATGAAGCACCAGAAACACAAAATGATGGTTGTGATTGGGTTAGTAATGATGAAGCTCTTTATATGACTCCTAGGAGCCAGTTTTACTAG 2040 0.4093 MRYHTLFILHFFLFITFILPLLSLPSQNITLFGDASFTDTSIALTKQKLTCLSSSSSGTGRAFYLYPVRFLDPLTNSTASFSCRFSFSIHSSPSCPSSSGDGIAFLISSTTDFSSLSNGYMGLPSSDKDSYFAVEFDTSFDPSLGDIDGNHVGIDLSSVVSFASVDVLSRGVDLKSGKIITAWIEYRDDMKMVRVWIGYSSTRPPTPILASLIDLSEIFKEFMHVGFSASNGKGSSIHLVHHWQFKTLSYSHSVSPMDNLEEGDCFLCYAGDSKASKKKGENYQGKKIGDLALGICGITAFVVSALALVVVICVYMKRKEGGVIRKIREGQSCRFQTNKVPMRLALSEITSATMGFNRDRLVGEGASAKVYKGSLPFGGDVAVKRFEKVDDLDRLHNPFATEFATMVGCLRHKNLVQLKGWCCEENELVLVYEYLPNGSLDKVLHKNLRSSFVLSWKQRVNIILGVAAALTYLHEECERQIIHRDVKTCNIMLDVDFNAKLGDFGLAEVYEHSSSTRDATIPAGTMGYLAPEYVYTGIPTVKTDVYSFGVVVIEVATGRKPVGDDGTVVGDYVWNLWEKNRLVDAADPKLMGEFDIVEMERVLLVGLVCVHPDNEKRPRVRDAARMIKNEASVPLLPPCKPRVRIRPIYPDEAPETQNDGCDWVSNDEALYMTPRSQFY 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02822 679 SUPERFAMILY Protein kinase-like (PK-like) 338 626 IPR011009 -
Vifa3g02822 679 FunFam L-type lectin-domain containing receptor kinase S.6 318 434 - -
Vifa3g02822 679 Gene3D Phosphorylase Kinase; domain 1 320 434 - -
Vifa3g02822 679 CDD STKc_IRAK 362 629 - -
Vifa3g02822 679 ProSiteProfiles Protein kinase domain profile. 356 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02822 679 Pfam Legume lectin domain 12 248 IPR001220 GO:0030246
Vifa3g02822 679 CDD lectin_legume_LecRK_Arcelin_ConA 12 247 IPR001220 GO:0030246
Vifa3g02822 679 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Vifa3g02822 679 Pfam Protein kinase domain 357 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02822 679 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 249 IPR013320 -
Vifa3g02822 679 PANTHER - 35 637 - -
Vifa3g02822 679 Gene3D Transferase(Phosphotransferase) domain 1 435 633 - -
Vifa3g02822 679 Gene3D - 13 260 - -
Vifa3g02822 679 FunFam L-type lectin-domain containing receptor kinase VIII.1 435 645 - -
Vifa3g02822 679 SMART serkin_6 356 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02822 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02822 Vifa-Chr3 793435858 793437897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02822 3 678 Receptor kinase-like Gene Family AT5G42120 54.429 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa3g02822 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02822 - - lang:109346768 915.22