Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02815 ATGGATTTGCTTGAAGGCGTCGGAGAGAGTTCATCGCCACCGCGCTCCTTCGGCGGTTACAGCAGCCACGATATCAGGGCCGACGTTTACAACCGATTGGTGGAAACCGGTCACGACGAAGCCGTATCGAATCCGGATTTTCGCGAACAGCTTGAAGCTCACTTCAATCGCTTGCCTCCAAGTTATGGACTTGATGTTAATGTTGATAGAGCTGAAGATGTTTTACTTCATCGGAATCTTCTTGATTTGGCAAGAGACCCCGATAAGCGCCCTGTTTACCATATACGCTTATTGGAGAATATTTCTACTAGAACAGATGGCGAAGATCAAGAAATTGTAAGTACTCATACTAGCCCTGAGTTATCTTCTCATACAACAAATGGGGGAGTCGTAGCATCTAATAAGAGGACAAGAGATCTTGCAACTGAGTTTGAGCCTTGCTCAAAGCTTGAGGACCTAAATTTGGATGTTTTAAAGAACTCCAAGGAAACAAAAGAAAATTTTGTTAGTGACAGCTTTTCTCAGAGGCATGAAAATTCAAGTGTCCCAGTTCATGAAATAATATTTTCTGCTGTTGACAAACCAAAGCTTTTAAGTCAGCTGTCCGCTTTGCTGTCTGATATTGGGCTTAACATCCGTGAAGCACATGTATTTTCCACAACTGATGGCTACTCCCTCGATGTTTTTGTGGTAGATGGATGGCCACTAGAGGAAACCGATGGGTTGTATGCTGCTATGGAAAAAGCTGTAGCAAGGAGTGAGGGGTCATGGTCTCATTCTTCAAATTCTCATTCAGCTGTGGCAAAAGCCTTAGCAGCGGAAGGAAAATCTGGGGACTGGGAAATAGACAGGAGATCGTTAAAGATAGGAGAAAAAATAGCATCTGGTTCCTGTGGAGATTTGTATCATGGAGTTTATCTCGGTGAAGATGTTGCTGTTAAGGTTTTGAAATCTGGGCAACTGAATGATGCCTTAGAAGATGAGTTTACGCAAGAAGTGGCAATTTTGAGACAGGTGCATCATAAAAATGTTGTTCGTTTCATTGGTGCATGCACAAAGTGTCCACATTTGTGCATAGTAACAGAGTATATGACTGGTGGAAGTCTGTATGATTACTTGCACAAAAATCGTAATGTCTTGGAGCTGTCTCAATTGCTCAAGTTTTCAATTGATGTCTGCAAGGGAATGGAGTATTTGCATGGAAATAACATAATTCACAGGGATCTGAAGACAGCCAATTTGCTGATGGATACTCACAATGTCGTTAAAGTGGCAGATTTTGGAGTTGCTCGGTTCCTTATTCAGGGGGGAGTGATGACTGCAGAGACTGGAACTTATAGATGGATGGCACCAGAGGTCATAAACCACCAGCCTTATGATCAGAAGGCAGATGTATTCAGTTTTTCCATAGTACTATGGGAACTAGTGACAGCAAAGGTACCGTATGATACCATGACTCCACTACAAGCTGCTTTGGGTGTGAGACAGGGATTAAGACCAGAGCTTCCAAAGCATGGGCACCCTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCAATTCCAAGCAGTCGTCCATTCTTCAATGAGATAAGAGTTGAACTTGAAAATCTTTTGCTAGAAGTGGAGAATAATTCAGAAGCTAATGCTGTAGAGTTTTTCACGCTCCCTTTTACTCCAAGGGAAAAAAGGACTTCACAAAAGCTGACCAATACAAAGCAAAATCACGTCTATGTTAACTGTGTAAAGATGTTGTGA 1758 0.4221 MDLLEGVGESSSPPRSFGGYSSHDIRADVYNRLVETGHDEAVSNPDFREQLEAHFNRLPPSYGLDVNVDRAEDVLLHRNLLDLARDPDKRPVYHIRLLENISTRTDGEDQEIVSTHTSPELSSHTTNGGVVASNKRTRDLATEFEPCSKLEDLNLDVLKNSKETKENFVSDSFSQRHENSSVPVHEIIFSAVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPLEETDGLYAAMEKAVARSEGSWSHSSNSHSAVAKALAAEGKSGDWEIDRRSLKIGEKIASGSCGDLYHGVYLGEDVAVKVLKSGQLNDALEDEFTQEVAILRQVHHKNVVRFIGACTKCPHLCIVTEYMTGGSLYDYLHKNRNVLELSQLLKFSIDVCKGMEYLHGNNIIHRDLKTANLLMDTHNVVKVADFGVARFLIQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKHGHPKLLDLMQRCWEAIPSSRPFFNEIRVELENLLLEVENNSEANAVEFFTLPFTPREKRTSQKLTNTKQNHVYVNCVKML 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02815 585 Gene3D Phosphorylase Kinase; domain 1 274 365 - -
Vifa3g02815 585 Pfam ACT domain 185 232 IPR002912 -
Vifa3g02815 585 ProSiteProfiles Protein kinase domain profile. 287 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02815 585 ProSiteProfiles ACT domain profile. 186 258 IPR002912 -
Vifa3g02815 585 MobiDBLite consensus disorder prediction 106 131 - -
Vifa3g02815 585 SUPERFAMILY Protein kinase-like (PK-like) 279 555 IPR011009 -
Vifa3g02815 585 SMART serkin_6 287 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02815 585 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g02815 585 Pfam Protein tyrosine and serine/threonine kinase 287 534 IPR001245 GO:0004672|GO:0006468
Vifa3g02815 585 CDD STKc_MAP3K-like 293 531 - -
Vifa3g02815 585 SUPERFAMILY ACT-like 185 253 IPR045865 -
Vifa3g02815 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Vifa3g02815 585 MobiDBLite consensus disorder prediction 114 131 - -
Vifa3g02815 585 Gene3D Transferase(Phosphotransferase) domain 1 366 583 - -
Vifa3g02815 585 PRINTS Tyrosine kinase catalytic domain signature 398 416 IPR001245 GO:0004672|GO:0006468
Vifa3g02815 585 PRINTS Tyrosine kinase catalytic domain signature 463 485 IPR001245 GO:0004672|GO:0006468
Vifa3g02815 585 PRINTS Tyrosine kinase catalytic domain signature 361 374 IPR001245 GO:0004672|GO:0006468
Vifa3g02815 585 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672|GO:0006468
Vifa3g02815 585 PRINTS Tyrosine kinase catalytic domain signature 444 454 IPR001245 GO:0004672|GO:0006468
Vifa3g02815 585 FunFam Serine/threonine-protein kinase isoform 1 277 365 - -
Vifa3g02815 585 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 182 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02815 Vifa-Chr3 789171998 789189143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02815 24 542 MAP Kinase Kinase Kinase AT2G17700 51.128 1.13e-180 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa3g02815 PK_Tyr_Ser-Thr 2.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02815 - - gmx:100782737 935.636