Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02814 ATGAGACCTCCCGGCGGAAGCAGCAACGTTCGTCGGCAACCGAAAGAGTCGGCCTACTTACCACCAACTCCACTAAACAGCCACCGTGACTCTGACTCTTGTCAAATTCATCTCTCTTTTTCTTCTCCCTCCCACACCACCACCCTCCAAACCAACAACATCGTCTTCCAGTATTCTCTCAACGCTTATCTAAATTTCATTAGAGGTGACGATGAAGCCATCTCCGAACTCGACCACGAAATCCGCACCAGGATTCTCCGTGAGAAGTCTAACGCTAACAACACCCTTGCTGCCGCTGAACAAAAGGTCTCTGAATTGGAGGCTCAATTGGAGGGATTGAGGTCTGCTCCTTCTCAGAAGGATTTACTCGACAAAGAGAAGGAAATGCTTCAAGGCGATGTCATTAAGTTTCACAAGATTATTGACGAGTTTGGGTTGCGGATTGAGTCGAAAGAGAGGGATTTGGTGGAGAAGGAGAAACAGTTGCAAGCTAAGGTCGTGGAGAGCGACAACATATGTCAAGAGAATAAAATGCTAAAGAAGAAGGTGGAGTCACAGCCTTTCAATACCAGGGACGTTGAGAGGATGAAAAGAGAGTTGCAGGCTGCTGAGAGGGATGCTGGAGAGGCTGAACTTGCTAGGAATGATTGGGAGGAAAAGTGTTGGGAGCTTGACCATAACTTCTGTGCTGATGTTAATAGGGATCAATTATTAAGCAAACTCTTACTTTCATGTGCTTCTAGGTTGAAGATTGGTAATGACATTCAATATGTGTTGAATCCCAAGGGAACCACGCCTGCTGAGATCATGGGCATATGCTGCTGCCGTACAGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTGCCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGGAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATCTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATACAGTTTGGTTCAGAGGAGTCTGCAAATGATGATATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTGAACCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCACTTCTTAAAGAAAAGTTCTCATCTTTTGGAAAAATTCTTAGCTTGGCTATTGTAAAGGATGAGAAAGGGTTGTCAAAAGGTTTTGTATTTATGAACCATGAAAACCCGGATGATGCAAGACGAGCAACGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACCTGTATGTTGCAAGAGCACAAAAAAAGGTTGAACGTGAGAAGATCTTGCATCAGTGGTTTGCAGAAAGATGCATGGAGAAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGATAATGTTAGTGACGAAGAACTAAAGAGTCAGTTTAGTGCTTGTGGCACAATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGAAAAAGCAAAGGCTTTGGGTTTGTCTGTTTCTCTACCCTGGATGAGGCTGTTAAGGCTGTGAACAGTTTTCATGGACGCATGTTTCACGGAAAACCGTTGTATGTTGCTTTTGCTCAGAGGAAAGATGTTAGGCAAAGCCTATTGCAGCTCCAGCATTCGCACTGGTGTTGTTTATCATCACCCTAA 1998 0.4209 MRPPGGSSNVRRQPKESAYLPPTPLNSHRDSDSCQIHLSFSSPSHTTTLQTNNIVFQYSLNAYLNFIRGDDEAISELDHEIRTRILREKSNANNTLAAAEQKVSELEAQLEGLRSAPSQKDLLDKEKEMLQGDVIKFHKIIDEFGLRIESKERDLVEKEKQLQAKVVESDNICQENKMLKKKVESQPFNTRDVERMKRELQAAERDAGEAELARNDWEEKCWELDHNFCADVNRDQLLSKLLLSCASRLKIGNDIQYVLNPKGTTPAEIMGICCCRTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTAAICFVCNRPENKLGDDETWDRAESALKEALDECGKGNVFVKNLAESIDNVGLHDLFQEYGNILSSKIVISEDGKSKGFGYIQFGSEESANDDIQKMNGSTVRDKQIYVGKFIRKSERSLPEPDAKYTNLYVKNLDPDITEALLKEKFSSFGKILSLAIVKDEKGLSKGFVFMNHENPDDARRATEAMNGSQFGSKNLYVARAQKKVEREKILHQWFAERCMEKNLKYKGSNIYVKNIDDNVSDEELKSQFSACGTITSAKVMRDDKGKSKGFGFVCFSTLDEAVKAVNSFHGRMFHGKPLYVAFAQRKDVRQSLLQLQHSHWCCLSSP 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02814 665 Coils Coil 193 220 - -
Vifa3g02814 665 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 373 450 IPR000504 GO:0003723
Vifa3g02814 665 Gene3D - 344 451 IPR012677 -
Vifa3g02814 665 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 567 644 IPR000504 GO:0003723
Vifa3g02814 665 SUPERFAMILY RNA-binding domain, RBD 562 651 IPR035979 GO:0003676
Vifa3g02814 665 FunFam Poly(A) binding protein cytoplasmic 1 like 365 454 - -
Vifa3g02814 665 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 541 IPR000504 GO:0003723
Vifa3g02814 665 PANTHER KINETOCHORE PROTEIN NDC80 HOMOLOG 45 272 - -
Vifa3g02814 665 Gene3D - 452 555 IPR012677 -
Vifa3g02814 665 Coils Coil 82 116 - -
Vifa3g02814 665 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g02814 665 FunFam Polyadenylate-binding protein 455 549 - -
Vifa3g02814 665 Gene3D - 46 154 - -
Vifa3g02814 665 SMART rrm2_1 568 640 IPR003954 GO:0003676
Vifa3g02814 665 SMART rrm2_1 465 537 IPR003954 GO:0003676
Vifa3g02814 665 SMART rrm2_1 374 446 IPR003954 GO:0003676
Vifa3g02814 665 Gene3D - 556 652 IPR012677 -
Vifa3g02814 665 SUPERFAMILY RNA-binding domain, RBD 374 542 IPR035979 GO:0003676
Vifa3g02814 665 CDD RRM4_I_PABPs 566 644 - -
Vifa3g02814 665 SMART rrm1_1 568 640 IPR000504 GO:0003723
Vifa3g02814 665 SMART rrm1_1 374 446 IPR000504 GO:0003723
Vifa3g02814 665 SMART rrm1_1 465 537 IPR000504 GO:0003723
Vifa3g02814 665 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 569 637 IPR000504 GO:0003723
Vifa3g02814 665 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 375 443 IPR000504 GO:0003723
Vifa3g02814 665 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 534 IPR000504 GO:0003723
Vifa3g02814 665 Coils Coil 141 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02814 Vifa-Chr3 787663384 787667360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02814 371 655 Eukaryotic Initiation Factors Gene Family AT2G36660 59.298 6.68e-116 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02814 K13126 - gmx:100804671 426.017