Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02804 ATGGATCTTAGCAACTTCATCGGAACTACTCCTGCTACGAGTGAGAAGCACCATACTTCCAATTGTACTCAAACCATCGATTCCAATGAACTCTTAGAAAACATGCTTTGCATGGATATTAGTGAATTCGACTTCAGCCTCTTCGACATCCCATTACCACCTTCATCATTGCCGCCTATTGCTCCTATTCCTGCACCTTCACAGCCGCCAAAGCTTCTGAGCTTCTCTGAGGTATCTGATAATGTCAATTTGTTAGGAACGAATGGTGCCCTAGCTGCATGCCGTGGAAACGGTGGAGCGAGTGTATTAGGCCCCCGCCGTGACAGCAACCGTTTTTGTTTTGGTAGCGGGTCCTCAGCACCATCGTCTTATTGGAAGAGAACGGTCATACCTCCGGAAAAGCTTGCGGAACTTGAAATTTCTGATCCCAGTAAAGCAAAGAGGATTATTTCTAATAGGGTTGCTGCGAAAAAATCTAAGGAGAAGAAAAGGAAATATGAGAAAGAGCTGGAAAAAAGAGTCGAGTTACTTCAGATTAGAGCCGATAATGTAATTGCAGAGCGTGTGATGGCGATGAATGAAGTTATGCAATTAGCTGCTGAGCGCAAGAGGATCAAAGACCAGATAGAGTCTACTTTACAGCATCAACAACAGCAAAGAGCTGTGATTGAATTGATGAAGCAAGAAGCAGATATCCTTAAGAGGCAAATTCATGACATGAATAAAGCAATGGCTGATTTATCTTTTGGTGAACCGGTCTCTCAATCCCAGCCTCAGGTTCCTCATCAGCCAGAACTCTACATACCGCTGCAGACGCCTCTAGCTCCTCCTCCACCACTTACCTTTGGCGAGCTTTCACTTCCTCCACCACCATCTTCCTGTGGCGAGCCTTTACGTCCTCCTCGACCATCTCCCTTTGGCGAGTTTTTGGTTCCTCCTCCGCCATCTCCCTTCGGTGTGCCTTTTAGTGATCAATTTATCGGCACCAGTTTTTCAAACTACAATCCATGGAACTAG 1017 0.4572 MDLSNFIGTTPATSEKHHTSNCTQTIDSNELLENMLCMDISEFDFSLFDIPLPPSSLPPIAPIPAPSQPPKLLSFSEVSDNVNLLGTNGALAACRGNGGASVLGPRRDSNRFCFGSGSSAPSSYWKRTVIPPEKLAELEISDPSKAKRIISNRVAAKKSKEKKRKYEKELEKRVELLQIRADNVIAERVMAMNEVMQLAAERKRIKDQIESTLQHQQQQRAVIELMKQEADILKRQIHDMNKAMADLSFGEPVSQSQPQVPHQPELYIPLQTPLAPPPPLTFGELSLPPPPSSCGEPLRPPRPSPFGEFLVPPPPSPFGVPFSDQFIGTSFSNYNPWN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02804 338 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g02804 338 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 142 205 IPR004827 GO:0003700|GO:0006355
Vifa3g02804 338 SMART brlzneu 140 204 IPR004827 GO:0003700|GO:0006355
Vifa3g02804 338 MobiDBLite consensus disorder prediction 286 312 - -
Vifa3g02804 338 Pfam Basic region leucine zipper 141 178 IPR004827 GO:0003700|GO:0006355
Vifa3g02804 338 Coils Coil 156 187 - -
Vifa3g02804 338 Coils Coil 216 243 - -
Vifa3g02804 338 Gene3D - 145 196 - -
Vifa3g02804 338 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 108 263 - -
Vifa3g02804 338 SUPERFAMILY Leucine zipper domain 145 197 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02804 Vifa-Chr3 784450545 784452185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02804 97 234 bZIP Transcription Factor Family AT2G40620 35.971 1.44e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa3g02804 bZIP_2 3e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02804 - K20557 psat:127097598 369.777