Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02802 ATGGGGAAGAAGAAGCCATCAATTCGTGACGACGAGAATCCTCCGCAACAAGGCGGCGGTGGGAAATCGAAGAAAAAGGCTCCAGTCATCGACGACGACGAATACTCCATCGGAACTGAACTTTCAGAGGAGCCGTCGTTGCCACAGCCGGAGGAAAAACCTGGGAAGAAGAAAGGTAAAAAAGCTAACTCTAAATCTTTACAAGCTAAAGATAACGGTGATGATTTTGATAACGAGGACGATGATGATGTTCCTGAGATCGTGTTTGCTGGGATGAAAAAGGGGAAATCGAAGAAAAGTAGGGGTGGAAGTGTGTTTACTGCTGCTGCTGGTTTTGGTTTGCTTGGGGATGAGGAGGATGTTGATAATGATGATGACGATGGCGACGAGGATGAACCAGTTGTTAGTTTTACTGGGAAGAAGAAGTCTTCAAAAGGAAACAAGAAGGGCGGTTCTTTGTTTTCAGCTGTTAGTTTTGATGAGATTGATGGAGAGGATGAGAGTAAGAATGAAAAGGTGGAAGATGATGATGAAGATATAGGACCAATCACTTTCACAGGTAAGAAAAAGAAGTCATCCAAGTCTTTGAAGAAGTCGGTTAGCTTATTGAGTACTGATATTCCGGATGAGGATAGTGTTTCTGTATCCGAGTCTGCTAAGGGTGGCGATGATAAAGATGAAGACGATGTACCTTTAGTTGAATTTACTGGTAAAAAGAAGTCCTCTAAGAAGAAAAGTGGCACGGCTGCTGCTAAAGTGGGTAATGAAATTGAGTTTGGGAGTGAAGGTGTAGATGTTGTTGAGACTGAGAAACCTAGTGCTGGAGTTAGTAGTACTAATGTTGACAATGGCAATATAAGTAAGAGTGAAGAGGTCGTTGGAACTTCCAAAAATAAGAAGAAGAATAAGAAGAAGAGTGGGAGAACTGCTCAAGAGGAGGAGGATTTAGATGCGATTCTTGCAGAGCTTGGTGAAGCCCCTCCTACAGCAAAACCTTCTGCTCCTCCAAAGCAGGATGATAATGTCCAGCCTGCTCTGGAAGTTGGTTCTGCCCCTGGTGCTTCAGGGGAAAAAGAGGGAGAAGAGGAGACTGTAGAATCAGCTGCTGCAAAAAAGAAGAAAAAGAAGAAAGAAAAGGAAAAGGAGAAGAAGGCTGCAGCAGCAGCAGCCGGAAGTGCAATGGCAATTGAAACTGAAGAAGTAAAGGCTGAGACAATTGAACCAAAGAAAAATGATTTGAAGGCCAAAGCAGCTGCTGACAAGAAATTGCCAAAGCATGTTAGGGAGATGCAAGAATTACTAGCTCGAAGAAGAGAGGCTGAAATAAAAAAGAAAAGAGAAGAGGAGGAAAAACTAAGGAAAGAAGAAGAGGAGCGACAAAGGCTAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAAACGTAGAAAGAAGGAAAAGGAAAAGGAAAAACTTTTGAAAAAGAAGCAAGAAGGTAAATTGTTGACTGGTAAGCAGAAAGAAGAAGCCCGGCGATTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACAGGGGGTGTGACTCTCCCTGCTGGGGACACTGGTGCACCAACCAAGAAACCCATTTATCAGACAAAGAAGGGGAAATCAACTAGTAGAAATTATAATGGTGCTGCTGCTGTCAAGACAGATGAAATTATTGAAGCAAAGGAAACTACCGCTGATTTGGGTTCAGAGGAACCAAAGAAGGTTGAAGAGGTGGAGTCGGTGCAGAAGGAGGACAAAGTTGAACTTTCGGAAGCTGTTGAAGAGGATAGAGTGGAAGAAGATGATGTTGAGGATGAATGGGACGCCAGAAGCTGGGATGATGTCAATCTGAATGATAAAGGTGCATTTGCTGATGAAGAAGTTGACTCTGAGCCTGAAATGATTGTCAAAAAAGAGATTAAAACTGGCATACCTGCTAAAAATGCTGGTGCTACAAGTAAAACTGTTTCGAAGCATGTTGCTGGAGAAATTGAAGATAGAAAACAGGCCAAAGTTGTGGTTGAGGACAAAAAGAAAAAGCCCGACCCACAACAGTCTGCTGTGTCTTCTAAGCCGAGTGATGCAAGCCTCCGTTCACCAATTTGCTGCATCATGGGTCATGTGGACACTGGCAAAACCAAGCTTCTGGATTGTATTCGAGGTACCAATGTTCAAGAAGGCGAGGCTGGCGGTATCACCCAACAGATTGGCGCAACATACTTTCCTGCTGAGAACATACGTGAAAGAACTAAGGAATTGAAAGCCGATGCAACACTGAAAGTTCCAGGTCTACTGGTTATCGATACCCCAGGCCACGAATCATTCAATAATCTGAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATCTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTAAAGAGTCACTCGAACTATTAAAAATGAGGAACACAGAATTCATTGTTGCATTGAATAAGGTTGATAGGCTTTATGGCTGGAAAACATTTCGCAATGCTCCAATTCGTAAAGCAATGTTGCAGCAGTCTAAGGATGTTCAAAATGAGTTCAATATGAGGCTCGAACAGATTGTTACCGAGTTCAAGGAACAGGGGCTAAATACTGCATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGCGGTGAAGGAATCCCAGATATGTTATTACTATTGGTTCAGTGGACCCAAAAGACCATGATTGAGAAACTTACATACAGTGATGAAGTGCAGTGTACTGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACAATTGATGTTGTTTTAGTTAATGGCGTCCTTCATGAAGGAGATCAAATAGTTGTACCTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTATTAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCGATGGGCATCAAGATCACTGCCCAGGGACTTGAACATGCTATTGCTGGCGGAAGTTTATATGTGGTGAAGCCTGATGATGATTTAGAATATATTAAAACCGCAGCCTTAGAAGACGTGGAGTCGGTCTTGAGCAGGATTGATAGGAGTGGTGAGGGCGTTTGTGTCCAGGCATCTACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCAGAAGTGAATATTCCTGTTAGTTCTATAAGCATAGGCCCTGTACATAAGAAGGATGTGATGAAAGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATTCTACTATATTGGCATTCGATGTCAAAGTCACGCCCGAAGCCAGGGAACTTGCAGAGGAATTGGGCGTTAAAATATTTATTGCCGATATCATTTATCATCTATTTGATCAATTTAAGGCTTACATGGAAAACATTAAGGAGGAGAAAAAGAAAGAATCGGCTGATGAGGCAGTCTTCCCATGCGTTCTGAAGATCTTACCAAATTGTGTTTTCAACAAGAAGGATCCAATTGTTTTGGGAGTTGACATCCTTGAAGGCATTTTGAAGATTGGAACTCCAATTTGTATTCCTTCCCAAGATTTCATTGACATTGGACGCATTGCCTCCATTGAGAATAACCACAAACCAGTTGATTATGCAAAGAAAGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAGGAACATCAGAAAATGTTCGGCAGACATTTTGAGATTGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATTCTCAAATCTGATTATCGGGATGAACTAAGTAATGAAGAATGGAAGCTGGTGGTGAGGTTGAAGACTCTTTTCAGGATACAATGA 3873 0.4216 MGKKKPSIRDDENPPQQGGGGKSKKKAPVIDDDEYSIGTELSEEPSLPQPEEKPGKKKGKKANSKSLQAKDNGDDFDNEDDDDVPEIVFAGMKKGKSKKSRGGSVFTAAAGFGLLGDEEDVDNDDDDGDEDEPVVSFTGKKKSSKGNKKGGSLFSAVSFDEIDGEDESKNEKVEDDDEDIGPITFTGKKKKSSKSLKKSVSLLSTDIPDEDSVSVSESAKGGDDKDEDDVPLVEFTGKKKSSKKKSGTAAAKVGNEIEFGSEGVDVVETEKPSAGVSSTNVDNGNISKSEEVVGTSKNKKKNKKKSGRTAQEEEDLDAILAELGEAPPTAKPSAPPKQDDNVQPALEVGSAPGASGEKEGEEETVESAAAKKKKKKKEKEKEKKAAAAAAGSAMAIETEEVKAETIEPKKNDLKAKAAADKKLPKHVREMQELLARRREAEIKKKREEEEKLRKEEEERQRLEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGVTLPAGDTGAPTKKPIYQTKKGKSTSRNYNGAAAVKTDEIIEAKETTADLGSEEPKKVEEVESVQKEDKVELSEAVEEDRVEEDDVEDEWDARSWDDVNLNDKGAFADEEVDSEPEMIVKKEIKTGIPAKNAGATSKTVSKHVAGEIEDRKQAKVVVEDKKKKPDPQQSAVSSKPSDASLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTKESLELLKMRNTEFIVALNKVDRLYGWKTFRNAPIRKAMLQQSKDVQNEFNMRLEQIVTEFKEQGLNTALYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMIEKLTYSDEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVPGMQGPIVTTIRALLTPHPMKELRIKGSYIHHKEIKAAMGIKITAQGLEHAIAGGSLYVVKPDDDLEYIKTAALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSSISIGPVHKKDVMKASVMLEKKREYSTILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFKAYMENIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQDFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEHQKMFGRHFEIDDELVSHISRRSIDILKSDYRDELSNEEWKLVVRLKTLFRIQ 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02802 1290 Coils Coil 358 390 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 356 373 - -
Vifa3g02802 1290 CDD aeIF5B_II 922 1027 - -
Vifa3g02802 1290 FunFam eukaryotic translation initiation factor 5B 921 1040 - -
Vifa3g02802 1290 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 698 914 IPR000795 GO:0003924|GO:0005525
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 272 292 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 216 241 - -
Vifa3g02802 1290 Pfam Elongation factor Tu domain 2 937 1014 IPR004161 GO:0005525
Vifa3g02802 1290 Pfam Elongation factor Tu GTP binding domain 702 910 IPR000795 GO:0003924|GO:0005525
Vifa3g02802 1290 FunFam Eukaryotic translation initiation factor 5B 692 920 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 1 83 - -
Vifa3g02802 1290 NCBIfam small GTP-binding protein domain 703 827 IPR005225 GO:0005525
Vifa3g02802 1290 CDD IF2_eIF5B 701 911 - -
Vifa3g02802 1290 CDD IF2_aeIF5B_IV 1161 1256 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 595 610 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 117 132 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 197 212 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 673 697 - -
Vifa3g02802 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 989 IPR027417 -
Vifa3g02802 1290 Coils Coil 423 490 - -
Vifa3g02802 1290 PRINTS GTP-binding elongation factor signature 702 715 IPR000795 GO:0003924|GO:0005525
Vifa3g02802 1290 PRINTS GTP-binding elongation factor signature 818 827 IPR000795 GO:0003924|GO:0005525
Vifa3g02802 1290 PRINTS GTP-binding elongation factor signature 766 776 IPR000795 GO:0003924|GO:0005525
Vifa3g02802 1290 PRINTS GTP-binding elongation factor signature 782 793 IPR000795 GO:0003924|GO:0005525
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 400 427 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 46 73 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 563 613 - -
Vifa3g02802 1290 Gene3D - 693 920 IPR027417 -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 513 548 - -
Vifa3g02802 1290 Gene3D Translation factors 1153 1290 - -
Vifa3g02802 1290 Gene3D Translation factors 921 1041 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 110 427 - -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 563 594 - -
Vifa3g02802 1290 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 301 1286 IPR015760 -
Vifa3g02802 1290 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1024 1152 IPR036925 -
Vifa3g02802 1290 FunFam Eukaryotic translation initiation factor 5B 1040 1146 - -
Vifa3g02802 1290 Gene3D - 1042 1146 IPR036925 -
Vifa3g02802 1290 FunFam Eukaryotic translation initiation factor 5B 1153 1290 - -
Vifa3g02802 1290 Pfam Translation-initiation factor 2 1030 1139 IPR023115 -
Vifa3g02802 1290 MobiDBLite consensus disorder prediction 441 501 - -
Vifa3g02802 1290 SUPERFAMILY Translation proteins 1157 1289 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02802 Vifa-Chr3 782675015 782685019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02802 1 1290 Eukaryotic Initiation Factors Gene Family AT1G76810 62.322 0.0 1207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02802 K03243 - gmx:100814640 1519.98