Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02792 ATGGATATTTCCTCCGGTGAGAATATGGTGTCGCCGCCGGTGAACGGCGGCGAGGAAGATGATAAGATGAATATGAGTGGTGGTGGTGGAAATAGGTGGCCCCGCCAAGAAACATTGGCTCTCTTGAAGATAAGATCAGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTTCAAGGAAACTAGGTGAATTTGGTTATCATAGAAGCTCAAAAAAGTGCAAAGAGAAATTTGAGAATGTGTACAAATATCATAAAAGAACCAAAGAAGGTAGAAGTGGAAAATCAGAAGGAAAAACGTATAGATTTTTTGATGAGTTACAAGCACTTGAAAAAAAAATCACATTCTCTTCTACTTACCCTCCAAAACCACTTCCAAATAATAACACACTCTCATTACCACCAACAATGCCTAATATTGAAGCCACAAAAACAATATCACATGTTACCAATATTACTATTCCGTCCACAAACCCTACCACACTTGTTTCTCCTTCACCACCGCCACCAACGCCACCACCGCAAACAACCAATGCAACAAACACGACCAACCCTAACAACAACAATAGCCACAACAATGTTTCATATTCTTTACCAAACATGAACGTGAACCTATTCTCCACCGCAACTACCTCAACTTCCTCTTCCACGGCTTCTGACGAAGACTTGGAAGAGAAGTACAGAAAGAAGAGAAAATGGAAAGACTATTTCAGGAGACTCACGAGAGAAGTGCTTGCGAAACAAGAGGACATGCAAAAGAAATTCTTGGAAGCCATAGACAAGCGCGAAAAGGAACACATGGCTCAACAAGATGCTTTGAGAGTTCAAGAAATGGCAAGAATCAACAAAGAGCATGAACTTCTTGTCCAAGAAAGATCTTCGGCAGCTCAAAAGAATGCCGCGGTTATTGCTTTTCTCCAGAAACTGTCTGGACAACCACCACAACAACAACCACCGCCACCGCCACCACCACCACCACCAGCGTCAGATCTCTCTCTAACTCCGGTATCACAAATACAAACACAGCAGCTAATGATACCAAACAACAACATTGTTGAGTTTCAGAATATGAACAATGGTCACAAAAGTGCTTGTGATGTTGCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTTCATGCTCTAATAAGGATAAGAACAAGTCTTGAACCCAAGTATCAAGAAAATGGTCCAAAAGCACCATTGTGGGAAGACATATCAGATGGAATGAAGAGACTTGGCTACAATAGGAATGCGAAAAGGTGCAAAGAAAAGTGGGAGAATATCAACAAGTACTACAAGAAAATGAAAGAAAGTAACAAGCAAAGGCGCGATGATAGCAAAACATGTCCTTATTTTCACGAACTCGAAGCTCTTTACAAAGAAAAGAACAAATTACAGAACCCTTTCGGTTCCAATTCGTTTCATAGTATGAAGTCAAGTGAAATGATGGAGCCATTGATGGTGCAACCAGAACAACAATGGAGACCTCCAACTCAATATGAAGAAGGTCATGTGGTCAAGAAGATTAATAACAACGAAGAAAAACAAGATGATAACGGTGATGTTGACGATGAAGAAGATGATAACATGGATGACTATGAAGATGGAGATAGCATGGAAGAAGACGAAGGAGGTGTTAGTAGTCGTTATGAAGTTGTAACAAATAAACTTCCATCAATGAAGACACTTGGATGA 1716 0.4056 MDISSGENMVSPPVNGGEEDDKMNMSGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLGEFGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDELQALEKKITFSSTYPPKPLPNNNTLSLPPTMPNIEATKTISHVTNITIPSTNPTTLVSPSPPPPTPPPQTTNATNTTNPNNNNSHNNVSYSLPNMNVNLFSTATTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTREVLAKQEDMQKKFLEAIDKREKEHMAQQDALRVQEMARINKEHELLVQERSSAAQKNAAVIAFLQKLSGQPPQQQPPPPPPPPPPASDLSLTPVSQIQTQQLMIPNNNIVEFQNMNNGHKSACDVASPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISDGMKRLGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFHELEALYKEKNKLQNPFGSNSFHSMKSSEMMEPLMVQPEQQWRPPTQYEEGHVVKKINNNEEKQDDNGDVDDEEDDNMDDYEDGDSMEEDEGGVSSRYEVVTNKLPSMKTLG 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02792 571 CDD GT1 378 443 - -
Vifa3g02792 571 FunFam Trihelix transcription factor GT-2 33 94 - -
Vifa3g02792 571 SMART sant 376 438 IPR001005 -
Vifa3g02792 571 SMART sant 29 91 IPR001005 -
Vifa3g02792 571 MobiDBLite consensus disorder prediction 168 183 - -
Vifa3g02792 571 Gene3D - 380 441 - -
Vifa3g02792 571 Gene3D - 33 94 - -
Vifa3g02792 571 MobiDBLite consensus disorder prediction 1 34 - -
Vifa3g02792 571 ProSiteProfiles Myb-like domain profile. 31 89 IPR001005 -
Vifa3g02792 571 MobiDBLite consensus disorder prediction 500 571 - -
Vifa3g02792 571 MobiDBLite consensus disorder prediction 160 205 - -
Vifa3g02792 571 MobiDBLite consensus disorder prediction 524 548 - -
Vifa3g02792 571 FunFam Trihelix transcription factor GT-2 380 441 - -
Vifa3g02792 571 PANTHER FI21293P1 18 522 - -
Vifa3g02792 571 MobiDBLite consensus disorder prediction 318 340 - -
Vifa3g02792 571 MobiDBLite consensus disorder prediction 320 338 - -
Vifa3g02792 571 MobiDBLite consensus disorder prediction 184 205 - -
Vifa3g02792 571 Pfam Myb/SANT-like DNA-binding domain 378 465 IPR044822 -
Vifa3g02792 571 Pfam Myb/SANT-like DNA-binding domain 31 117 IPR044822 -
Vifa3g02792 571 ProSiteProfiles Myb-like domain profile. 378 436 IPR001005 -
Vifa3g02792 571 CDD GT1 31 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02792 Vifa-Chr3 777851040 777853402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02792 26 500 Trihelix Transcription Factor Family AT1G76890 51.497 2.27e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa3g02792 Myb_DNA-bind_4 4.5e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02792 - - gsj:114370603 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04732 1 740508531 740511636 Vifa3g02792 3 777851040 777853402 PCT