Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02775 ATGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCTGCTGGAGTGACAAAAGACTCTCATGGGTTTGAGGAAGGTTGCGTGTATTGGTGCATGGCATCCTGCCACAGAGTGACAGAAGGTAAGGGTCATGAAGGTGTTGTTTCTCGTTGGGGTGTTACCCGTCTCCCCCGTAAGACTCACATGGGTTCGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCTGCCAGAGTGACAGAAGGTAAGGGTCATGAAGGTATTGTTTCTCGTTGGGGTGTTACCCGAGTGACAGAAGGTACGGGTCATGAAGGTGTGGTTTCTCGTTGGGGTGTTACTCGTCTCCCTCGTAAGACTCACATGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCTGCCAGAGTGACAGAAGGTAAGGGTCATGAAGGTGTTGTTTCTCCTTGGGGTGTTACTCGGCTCCCCCGGAAGACTCACATGGGTTTGAGGAAGGTTGCTTGTATTGGGGCATGGCATCCTGCCAGAGTTACAGAAGGTAAGGGTTATGAAGGTGTCGTTACTCGTTGGGGTGTTACCCGTCTCCCCCGTAAGACTCACACGGGTTTGAGGAAGGTTGCTTGTATTGATGCATGGCATCCTGCCAGAGTTTCCTCCACTGTTGCAAGGGCTGGTCAGAACCGTTACCACCACCGTACTGAGCTGAACAGGAAGATTTACAAGCTCGGCAAATCTGGAGAGGAGACCTACGATGCACAGCCCAAGTTTGATAGGTTGGTAACATTCGCTGATTATTTTCTGGTGTCATTTCAACCAGTATTACACTTCTATCCAAAATGTTTAACCAATCTGAACTTGTTAACAGGACTGAGAAAAGACATCACCCCCATGGGTGGTTTTCCTCGCACCAATTTCTTTGAGAAGCAGGTTCCTATTGATGCTGTTTTCCAGAAGGATGGAATGATTGATATCATTGGAGTGACAAAAGGTAAGGGTTATAAAGATGTTAATCGTTGGGGTGTTAGCCGTCTCCCCCGTAAGACTCACATGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCTGCCGGAGTTTCCTTCACTGCTGCCAAGGGCTGTTGCAAGTGCTTAATAGCTTGGTAA 1146 0.4869 MGLRKVACIGAWHPAGVTKDSHGFEEGCVYWCMASCHRVTEGKGHEGVVSRWGVTRLPRKTHMGSRKVACIGAWHPARVTEGKGHEGIVSRWGVTRVTEGTGHEGVVSRWGVTRLPRKTHMGLRKVACIGAWHPARVTEGKGHEGVVSPWGVTRLPRKTHMGLRKVACIGAWHPARVTEGKGYEGVVTRWGVTRLPRKTHTGLRKVACIDAWHPARVSSTVARAGQNRYHHRTELNRKIYKLGKSGEETYDAQPKFDRLVTFADYFLVSFQPVLHFYPKCLTNLNLLTGLRKDITPMGGFPRTNFFEKQVPIDAVFQKDGMIDIIGVTKGKGYKDVNRWGVSRLPRKTHMGLRKVACIGAWHPAGVSFTAAKGCCKCLIAW 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02775 381 Gene3D Translation factors 312 329 - -
Vifa3g02775 381 SUPERFAMILY Translation proteins 94 137 IPR009000 -
Vifa3g02775 381 SUPERFAMILY Translation proteins 177 308 IPR009000 -
Vifa3g02775 381 SUPERFAMILY Translation proteins 137 179 IPR009000 -
Vifa3g02775 381 SUPERFAMILY Translation proteins 306 369 IPR009000 -
Vifa3g02775 381 FunFam 60S ribosomal protein L3 180 228 - -
Vifa3g02775 381 Gene3D Ribosomal protein L3, domain 3 42 80 IPR044892 -
Vifa3g02775 381 Gene3D Ribosomal protein L3, domain 3 180 228 IPR044892 -
Vifa3g02775 381 Gene3D Ribosomal protein L3, domain 3 140 177 IPR044892 -
Vifa3g02775 381 Gene3D Ribosomal protein L3, domain 3 100 137 IPR044892 -
Vifa3g02775 381 Gene3D Ribosomal protein L3, domain 3 330 373 IPR044892 -
Vifa3g02775 381 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 305 374 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vifa3g02775 381 Gene3D Translation factors 178 249 - -
Vifa3g02775 381 SUPERFAMILY Translation proteins 39 87 IPR009000 -
Vifa3g02775 381 Pfam Ribosomal protein L3 94 138 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vifa3g02775 381 Pfam Ribosomal protein L3 38 80 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vifa3g02775 381 Pfam Ribosomal protein L3 304 372 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vifa3g02775 381 Pfam Ribosomal protein L3 177 258 IPR000597 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02775 Vifa-Chr3 769026023 769027408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02775 39 80 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 85.714 1.45e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02775 K02925 - zof:122020325 157.147