Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02774 ATGTTATTGAGGGTTTCTTCTTCAGTTGACCTGCAAAACATGGTTTCATCACATGGGTTCGAGGAAGGTTGCTTGTATTGGTGCATATGGCATCCTGCCAGAGTGACAGAAGGTACGGGTCATGAAGGTGTGGTTTCTCGTTGGGGTGTTACTCGTCTCCCTCGTAAGACTCACATGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCTGCCAGAGTGACAGAAGGTAAGGGTCATGAAGGTGTTGTTTCTCCTTGGGGTGTTACTCGGCTCCCCCGGAAGACTCACATGGGTTTGAGGAAGGTTGCTTGTATTGGGGCATGGCATCCTGCCAGAGTTACAGAAGGTAAGGGTTATGAAGGTGTCGTTACTCGTTGGGGTGTTACCCGTCTCCCCCGTAAGACTCACACGGGTTTGAGGAAGGTTGCTTGTATTGATGCATGGCATCCTGCCAGAGTTTCCTCCACTGTTGCAAGGGCTGGTCAGAACCGTTACCACCACCGTACTGAGCTGAACAGGAAGATTTACAAGCTCGGCAAATCTGGAGAGGAGACCTACGATGCATAG 573 0.5044 MLLRVSSSVDLQNMVSSHGFEEGCLYWCIWHPARVTEGTGHEGVVSRWGVTRLPRKTHMGLRKVACIGAWHPARVTEGKGHEGVVSPWGVTRLPRKTHMGLRKVACIGAWHPARVTEGKGYEGVVTRWGVTRLPRKTHTGLRKVACIDAWHPARVSSTVARAGQNRYHHRTELNRKIYKLGKSGEETYDA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02774 190 Pfam Ribosomal protein L3 35 76 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vifa3g02774 190 Pfam Ribosomal protein L3 115 186 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vifa3g02774 190 SUPERFAMILY Translation proteins 75 117 IPR009000 -
Vifa3g02774 190 Gene3D Ribosomal protein L3, domain 3 76 116 IPR044892 -
Vifa3g02774 190 Gene3D Ribosomal protein L3, domain 3 24 75 IPR044892 -
Vifa3g02774 190 FunFam 60S ribosomal protein L3 118 166 - -
Vifa3g02774 190 SUPERFAMILY Translation proteins 35 75 IPR009000 -
Vifa3g02774 190 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 34 75 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vifa3g02774 190 Gene3D Ribosomal protein L3, domain 3 117 165 IPR044892 -
Vifa3g02774 190 SUPERFAMILY Translation proteins 115 182 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02774 Vifa-Chr3 769021338 769021910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02774 35 76 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 85.714 1.52e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02774 K02925 - zof:122023485 143.28