Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02773 ATGTTATTGAGGGTTTCTTCTTCAGTTGACCTGCAAAACATGGTTTCATCACATGGGTTCGAGGAAGGTTGCTTGTATTGGTGCATATGGCATCCTGCCAGAGTGACAGAAGGTACGGGTCATGAAGGTGTGGTTTCTCGTTGGGGTGTTACTCGTCTCCCTCGTAAGACTCACATGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCTGCCAGAGTGACAGAAGGTAAGGGTCATGAAGGTGTTGTTTCTCCTTGGGGTGTTACTCGGCTCCCCCGGAAGACTCACATGGGTTTGAGGAAGGTTGCTTGTATTGGGGCATGGCATCCTGCCAGAGTTACAGAAGGTAAGGGTTATGAAGGTGTCGTTACTCGTTGGGGTGTTACCCGTCTCCCCCGTAAGACTCACACGGGTTTGAGGAAGGTTGCTTGTATTGATGCATGGCATCCTGCCAGAGTTTCCTCCACTGTTGCAAGGGCTGGTCAGAACCGTTACCACCACCGTACTGAGCTGAACAGGAAGATTTACAAGCTCGGCAAATCTGGAGAGGAGACCTACGATGCACAGCCCAAGTTTGATAGGTTGGTAACATTCGCTGATTATTTTCTGGTGTCATTTCAACCAGTATTACACTTCTATCCAAAATGTTTAACCAATCTGAACTTGTTAACAGGACTGAGAAAAGACATCACCCCCATGGGTGGTTTTCCTCGCACCAATTTCTTTGAGAAGCAGGTTCCTATTGATGCTGTTTTCCAGAAGGATGGAATGATTGATATCATTGGAGTGACAAAAGGTAAGGGTTATAAAGATGTTAATCGTTGGGGTGTTAGCCGTCTCCCCCGTAAGACTCACATGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCTGCCGGAGTTTCCTTCACTGCTGCCAAGGGCTGTTGCAAGTGCTTAATAGCTTGGTAA 960 0.476 MLLRVSSSVDLQNMVSSHGFEEGCLYWCIWHPARVTEGTGHEGVVSRWGVTRLPRKTHMGLRKVACIGAWHPARVTEGKGHEGVVSPWGVTRLPRKTHMGLRKVACIGAWHPARVTEGKGYEGVVTRWGVTRLPRKTHTGLRKVACIDAWHPARVSSTVARAGQNRYHHRTELNRKIYKLGKSGEETYDAQPKFDRLVTFADYFLVSFQPVLHFYPKCLTNLNLLTGLRKDITPMGGFPRTNFFEKQVPIDAVFQKDGMIDIIGVTKGKGYKDVNRWGVSRLPRKTHMGLRKVACIGAWHPAGVSFTAAKGCCKCLIAW 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02773 319 SUPERFAMILY Translation proteins 244 307 IPR009000 -
Vifa3g02773 319 SUPERFAMILY Translation proteins 115 246 IPR009000 -
Vifa3g02773 319 Gene3D Translation factors 250 267 - -
Vifa3g02773 319 FunFam 60S ribosomal protein L3 118 166 - -
Vifa3g02773 319 Gene3D Translation factors 116 187 - -
Vifa3g02773 319 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 243 312 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vifa3g02773 319 Pfam Ribosomal protein L3 115 196 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vifa3g02773 319 Pfam Ribosomal protein L3 242 310 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vifa3g02773 319 Pfam Ribosomal protein L3 35 76 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vifa3g02773 319 Gene3D Ribosomal protein L3, domain 3 78 115 IPR044892 -
Vifa3g02773 319 Gene3D Ribosomal protein L3, domain 3 38 75 IPR044892 -
Vifa3g02773 319 Gene3D Ribosomal protein L3, domain 3 118 166 IPR044892 -
Vifa3g02773 319 Gene3D Ribosomal protein L3, domain 3 268 311 IPR044892 -
Vifa3g02773 319 SUPERFAMILY Translation proteins 75 115 IPR009000 -
Vifa3g02773 319 SUPERFAMILY Translation proteins 35 75 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02773 Vifa-Chr3 769015867 769016826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02773 35 76 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 85.714 2.23e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02773 K02925 - zof:122020325 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02773 3 769015867 769016826 Vifa3g02773 3 769015867 769016826 ECH