Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02770 ATGAATATGATGTCAGGTTTTGTTCCTGTCTCGTCTTCTAATTCTCCTCGTGTGTATCCTTCTAGTGGTTCTGGTGGTTCTGGTTCGTGGGTTGGACACAAAAGAGGTCGTGAAGATGCAGTTGTTGGTTCTTCTTCTCATCAAGATATCACCACGGTTCATAGAAATATTGCTGATTTCATATTACCTACTTCACATGAAAACTCATCGTCAGTGACAGAAACAACTGCAACTGCAACTACAACTACACCTTCAAGTACAAGCAATGCAACGCAGTCTAGTGAAGCAGCTTCAACAAATGAAGAAGAAACCGGAGAGATAAGAAGAAGATACAGAGGAGTTCGACAGAGACCATGGGGAAAATGGGCAGCAGAAATTCGGGATCCACACAAAGCAGCAAGAGTATGGCTCGGAACATTCGACACTGCAGAAGCTGCAGCAAGAGCTTACGATGAAGCTGCATTAAGATTCAGAGGAAACAGAGCCAAACTCAACTTCCCTGAAAATGTTACAGCAACTCAACAACGAACTTTTCCAGTGAATACTTCGTCTTCAAGCTTATCTATTTCTCCTGCACCACCGCAAATGCAGCCCCAACAACCACCACCGTTTGTTCAATTTCAAGACTCGTCTGAGTTGTTAAGAGACTATTATCAGTATTCTCAGATTCTGAAAGGTTCTGGTGATCTTCAAGGACTTGAGCAATGGTTCTACGAACCACAAATGGCCATGATTCATCCATCTTCTACGATGTTATCGCCGTCCCCGTCCCTTTCTTTGTCGTCTTCTTCATCTTCAGCTACATTTTCACCTTCCAGTCAATTATCCTCTGCTTCACTTCCTCTGTTTCCTGGTCAGCAAATGGAGTTTTTCCGGCAGCCGGAAGATCCATCTCGTAGCGGTGGTAGCTTCCATTTACCACCTTCAACATGGTCAGATACTGGTGGCTATCGTCCTCCTCCACCGCCACCTTCTTCTGGTTGA 984 0.4461 MNMMSGFVPVSSSNSPRVYPSSGSGGSGSWVGHKRGREDAVVGSSSHQDITTVHRNIADFILPTSHENSSSVTETTATATTTTPSSTSNATQSSEAASTNEEETGEIRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTATQQRTFPVNTSSSSLSISPAPPQMQPQQPPPFVQFQDSSELLRDYYQYSQILKGSGDLQGLEQWFYEPQMAMIHPSSTMLSPSPSLSLSSSSSSATFSPSSQLSSASLPLFPGQQMEFFRQPEDPSRSGGSFHLPPSTWSDTGGYRPPPPPPSSG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02770 327 MobiDBLite consensus disorder prediction 248 327 - -
Vifa3g02770 327 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Vifa3g02770 327 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Vifa3g02770 327 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Vifa3g02770 327 MobiDBLite consensus disorder prediction 248 283 - -
Vifa3g02770 327 MobiDBLite consensus disorder prediction 62 111 - -
Vifa3g02770 327 CDD AP2 118 169 IPR001471 GO:0003700|GO:0006355
Vifa3g02770 327 Gene3D AP2/ERF domain 109 169 IPR036955 GO:0003700|GO:0006355
Vifa3g02770 327 MobiDBLite consensus disorder prediction 62 100 - -
Vifa3g02770 327 FunFam Ethylene-responsive transcription factor 2 109 168 - -
Vifa3g02770 327 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Vifa3g02770 327 MobiDBLite consensus disorder prediction 178 193 - -
Vifa3g02770 327 MobiDBLite consensus disorder prediction 1 48 - -
Vifa3g02770 327 PANTHER DNA-BINDING DOMAIN 76 253 IPR044808 GO:0003700|GO:0009873
Vifa3g02770 327 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Vifa3g02770 327 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Vifa3g02770 327 MobiDBLite consensus disorder prediction 1 28 - -
Vifa3g02770 327 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02770 Vifa-Chr3 767659559 767660808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02770 65 207 AP2-EREBP Transcription Factor Family AT5G61890 51.389 7.88e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa3g02770 AP2 5.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02770 - - tpra:123903609 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04680 1 731251981 731253381 Vifa3g02770 3 767659559 767660808 PCT