Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02761 ATGGATACTCATACTGAAGATTTGCCTCCATACATTCATATAAATCAGAATGATTTTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTGTATGTGAATGCAGGTATAACGAAGATGACCCTTACAGTGCCTGTGCAGATGGGTGTCTAAATGTATTAACCAGCACTGAATGCACCCCTGGTCATTGCCCTTGTGGCATCCTCTGTAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTATTTAAAACTGAAGGACGAGGGTGGGGTCTTTTGGCTGATGAGGACATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGCAGATCCCATACATATGAAATTCAAGGTCTTAAGGATGCATATATCATTTCTCTTAATGCGTCTGAATCCATCGATGCAACTAGAAAGGGAAGCATTGCCAGATTTATTAATCATTCCTGTCAACCAAATTGTGAGACAAGAAAATGGAATGTCATGGGGGAAATAAGAGTCGGAATATTTGCAAGGCAAGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAGCCGATGTCAAATGCTGATGGACAAAGTGAACAATCCATGGATATTATACTTAAAGTCGAGGAACTATCAGAGTCCACTGCTTTTAATGTTCAACCAGTGGATTCAGTTGAGATCAAGGATTTCGATGATTCAGTTGAGGTCAAGGATTTAGGTGTTCAAAAAATTAAAACTGAAATAGTAAGCGAGGACATGAAGTTGTACTCCCAAGTTACCGAACATAACCTTCCACAAAAGAATGCAATGATATCGCGTATTCGAAGTAACACTGCAGGAAGAAACTATCGCATTGGACCTAGGTCCATCTCTACCAAAAGATCAAAAGCACAGAGTGGGGGAAAGTTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTGGACTTTTAGCATCAAAGGAAGCACAAGAAGAGATCTTAGATTATGAGAAAAGGAAAGATGACGCCACAGACGCTCTTGATGCTTTATACAATGAAATACGACCAGCCATTGAGGAACACGAAAGGGACACCCAAGACAGTGTATCTACAACAGTAGCTGAGAAATGGATTCAAGCATGCTGTCTAAAACTGAAGGCGGAGTTTGATCTTTACTCATCAATTGTCAAAAATGTTGCTTGTACTGCTCAAAAGCCACCTGGCCAAGCAAAAGCTACCGAAGTAGATAATGAAGCGAAAATCAAGCTTTTGCTTGATTGA 1473 0.3965 MDTHTEDLPPYIHINQNDFFMRRHKKQKEEDIAVCECRYNEDDPYSACADGCLNVLTSTECTPGHCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSHTYEIQGLKDAYIISLNASESIDATRKGSIARFINHSCQPNCETRKWNVMGEIRVGIFARQDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDEPMSNADGQSEQSMDIILKVEELSESTAFNVQPVDSVEIKDFDDSVEVKDLGVQKIKTEIVSEDMKLYSQVTEHNLPQKNAMISRIRSNTAGRNYRIGPRSISTKRSKAQSGGKFKNRIQKKIDAKYAAGLLASKEAQEEILDYEKRKDDATDALDALYNEIRPAIEEHERDTQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQKPPGQAKATEVDNEAKIKLLLD 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02761 490 Coils Coil 390 417 - -
Vifa3g02761 490 Gene3D SET domain 1 235 IPR046341 -
Vifa3g02761 490 PANTHER SET DOMAIN PROTEINS 7 477 - -
Vifa3g02761 490 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Vifa3g02761 490 SUPERFAMILY SET domain 9 220 IPR046341 -
Vifa3g02761 490 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Vifa3g02761 490 FunFam Histone-lysine N-methyltransferase 1 235 - -
Vifa3g02761 490 SMART set_7 83 206 IPR001214 GO:0005515
Vifa3g02761 490 Pfam SET domain 94 200 IPR001214 GO:0005515
Vifa3g02761 490 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Vifa3g02761 490 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
Vifa3g02761 490 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02761 66 222 C2H2 Transcription Factor Family AT2G23740 35.955 1.31e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g02761 SET 9.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02761 - - gmx:100804657 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02761 3 765677009 765682383 Vifa3g02761 3 765677009 765682383 ECH