Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02760 ATGGATCACGTCACCGAAGCCCTCCTGGCTGCCATAGGCAGTTTCATCATCGTCACACTCATAATCGCCGCCATCATACTCGTCTGTCAGCACCGCAAAACCACCCAATCTTGCCCCAACAACCAGATCCGAACCCTACCACTTCGAACCACAAATCATTACCCTACCAGCTCAAACTCCCTCCCGGTCGACGCCAGCTGGTCCGAAGATCCCAATCTCAAGATCTCCATGGAAGAACTCTTCCGCGCCACCAATGGCTTCTCCCCAAACCTCATCGTCGGCGACGGCAGCTTCGGCCTAGTCTACAAAGCTCGTCTCTCCAACGGCACTACCGTCGCCGTGAAAAAACTATCTCCCGACGCCTTCCAAGGCTTCCGCGAATTCGCGGCGGAGATGGAAACCCTAAGCAAGCTACGTCACCAAAACATCGTCAAAATCCTCGGTTACTGGGCCTCAGGACCTGAACGGTTACTCGTTTACGAGTTCATCGAGAAAGGAAACCTCGATCAATGGCTTCACGAACCTTCCTCCTCCACTCACCCAAATGACGACGTTTCATCTTCCACCGATCTAATTCGTTCTCCTTTACCTTGGAAAACAAGAGTCAACATCATGCGCGGTGTGGCCCACGGGCTTTGCTATTTACACGGGCTAGAAAAGCCGATTATTCATCGTGACATCAAAGCAAGCAATGTGTTGTTGGACTCTGATTTTCAGGCCTATATAGCTGATTTCGGCCTCGCACGTAGGATGGATAAATCACATTCGCACGTGTCAACACAGGTGGCGGGTACTACAGGTTACATGCCTCCAGAGTATTGGGAAGGGTCTAATGTAGCATACCCGAAAGTGGATGTGTATAGTTTTGGTGTGTTGATGATTGAAACTATGGCGGGCCACAGGCCCAATTTGTCCGTGAAATTAGAAGGAACTGATATTAGGCTTGTTAATTGGGCCAGGATGGTGAAGGAACGGAACACTGAAATGGAGATGTTGGATGTAAATATTCCAAGAGAAGAAGAAAATTTGAAGGAGAGTGTTAGGGAATATGTACGCATTGCTTGTATGTGCACTAATGAGTTACAGAAAGATAGGCCCCAAATGGCAGAAGTTGTCAAATTATTGGATTTAATGCCTCTTTGA 1143 0.4856 MDHVTEALLAAIGSFIIVTLIIAAIILVCQHRKTTQSCPNNQIRTLPLRTTNHYPTSSNSLPVDASWSEDPNLKISMEELFRATNGFSPNLIVGDGSFGLVYKARLSNGTTVAVKKLSPDAFQGFREFAAEMETLSKLRHQNIVKILGYWASGPERLLVYEFIEKGNLDQWLHEPSSSTHPNDDVSSSTDLIRSPLPWKTRVNIMRGVAHGLCYLHGLEKPIIHRDIKASNVLLDSDFQAYIADFGLARRMDKSHSHVSTQVAGTTGYMPPEYWEGSNVAYPKVDVYSFGVLMIETMAGHRPNLSVKLEGTDIRLVNWARMVKERNTEMEMLDVNIPREEENLKESVREYVRIACMCTNELQKDRPQMAEVVKLLDLMPL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02760 380 SUPERFAMILY Protein kinase-like (PK-like) 68 375 IPR011009 -
Vifa3g02760 380 Gene3D Phosphorylase Kinase; domain 1 50 162 - -
Vifa3g02760 380 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 376 - -
Vifa3g02760 380 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Vifa3g02760 380 CDD STKc_IRAK 93 378 - -
Vifa3g02760 380 FunFam Phytosulfokine receptor 2 163 379 - -
Vifa3g02760 380 FunFam Phytosulfokine receptor 2 49 162 - -
Vifa3g02760 380 SMART serkin_6 87 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02760 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vifa3g02760 380 Gene3D Transferase(Phosphotransferase) domain 1 163 378 - -
Vifa3g02760 380 ProSiteProfiles Protein kinase domain profile. 87 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02760 380 Pfam Protein tyrosine and serine/threonine kinase 93 375 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02760 Vifa-Chr3 765675454 765676596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02760 57 375 Receptor kinase-like Gene Family AT5G07280 42.724 4.01e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vifa3g02760 PK_Tyr_Ser-Thr 8.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02760 - - psat:127091132 694.115