Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02758 ATGGGCTGTGTTCAAGCCAAATCATCACAAGAATCTGATGAAGGAGGTACTTCAGGTTACAGAGGACTAAACAGATTCAAAATGGAAAATGGGTATGTTCCAAGTTCTCATTTTGTTGCTCACAGAAGATCTACTGGTCAGAGTCAAAAACATGTTGACCAGACTAAGAACTTTGATCATGGTCATCATGTCTATGAGAAAGAGAAACAACCCAGAAAGCATAAAGTAGTTGTTGATTCTAGTAGTGTTGCTGGAAAAGGAAAGAGAAATGGTGAATTGAAAGATAGTAAGAAGCAGTTGAATAACTGTTTTGAAGATGAGATGGTTGATGGATGGCCTAAATGGTTAGTTGATAATGTTCCTTCTCATGGGTTGGCTGGTTTGGTTCCAAAGAGTGCTGAATCTTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTAGATCGAGACACAGGCGATATTGTGGCACTAAAAAAGGTCCGCTTCAATACTTCGGAGCCTGAAAGCATTAAATTTATGGCAAGAGAAATTGCGATATTACAGAGATTGGATCATCCCAATATAGTGAAACTTAAAGGGTTAGCCACTTCAAGAATGCAGTACAGTATATATCTAGTTTTTGAGTTCATGCCAACAGATTTATCAAGAATTATTTCTCGACCCGAAGAAAGACTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTCCAGCATTGTCATGATAGAGGAATTCTGCATCGAGATATAAAGGGGTCGAATCTTTTGATAGATAAAAAGGGGATGCTTCAGATTGCAGATTTTGGACTTGCTAATTATTATAGTACAAATCAAGACCAGCCTCTCACAAACCGGGTTGTGACACTATGGTACCGAGCTCCTGAGTTGTTGTTAGGCTCCACGGATTATGGAGTCGGTATTGATCTATGGAGCGCTGGTTGTCTCCTTGCAGAAATGTTTAGAGGAATTCCAATCATGCCTGGAAGAACCGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGCGGCACACCATCACAAGAGTATTGGAAAAAGTTGAAACTTTCTACAACTTTTATACCTACAAAGTCTTATAGACCAAGTCTAGTAGAATCATTCAAGGATCTGCCCCCATCTTCTTTAGGTCTCTTATGCACACTTCTTGCTTTAGATCCTGCATTTCGTGGCAGTGCATCTAAAGCTCTTAAAAACGCGTTTTTCTTTACAAGCCCGTTGGCTTGTGATCTATCTGGTTTACCTGCAATCTACAAAGGAGATGATGAGCATATTCAAGCCAAAGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATACATGGAGCGTCGCAAGAATTTATCATCTAATAGGCCAATTGAACATACCGTACCCTCTAAAGAGGTATTGAGAAGTAATGGTGAGGCTGAAACTTATGTTCCAAGTGAAGAACCAGATCAACATTTACTCTTTGATTAG 1518 0.3953 MGCVQAKSSQESDEGGTSGYRGLNRFKMENGYVPSSHFVAHRRSTGQSQKHVDQTKNFDHGHHVYEKEKQPRKHKVVVDSSSVAGKGKRNGELKDSKKQLNNCFEDEMVDGWPKWLVDNVPSHGLAGLVPKSAESYKMIDKVGQGTYSNVYKALDRDTGDIVALKKVRFNTSEPESIKFMAREIAILQRLDHPNIVKLKGLATSRMQYSIYLVFEFMPTDLSRIISRPEERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKKGMLQIADFGLANYYSTNQDQPLTNRVVTLWYRAPELLLGSTDYGVGIDLWSAGCLLAEMFRGIPIMPGRTEVEQLHRIFRLCGTPSQEYWKKLKLSTTFIPTKSYRPSLVESFKDLPPSSLGLLCTLLALDPAFRGSASKALKNAFFFTSPLACDLSGLPAIYKGDDEHIQAKEQIKYMNSKIRRSRTYMERRKNLSSNRPIEHTVPSKEVLRSNGEAETYVPSEEPDQHLLFD 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02758 505 FunFam probable serine/threonine-protein kinase At1g54610 123 218 - -
Vifa3g02758 505 SUPERFAMILY Protein kinase-like (PK-like) 131 422 IPR011009 -
Vifa3g02758 505 ProSiteProfiles Protein kinase domain profile. 136 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02758 505 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Vifa3g02758 505 MobiDBLite consensus disorder prediction 465 505 - -
Vifa3g02758 505 Gene3D Phosphorylase Kinase; domain 1 128 218 - -
Vifa3g02758 505 MobiDBLite consensus disorder prediction 1 24 - -
Vifa3g02758 505 FunFam Putative serine/threonine-protein kinase 219 456 - -
Vifa3g02758 505 Gene3D Transferase(Phosphotransferase) domain 1 219 469 - -
Vifa3g02758 505 Pfam Protein kinase domain 136 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02758 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Vifa3g02758 505 MobiDBLite consensus disorder prediction 1 17 - -
Vifa3g02758 505 SMART serkin_6 136 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02758 505 PANTHER CELL DIVISION PROTEIN KINASE 134 423 - -
Vifa3g02758 505 MobiDBLite consensus disorder prediction 66 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02758 Vifa-Chr3 764464445 764467259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02758 131 475 Core Cell Cycle Gene Families AT5G10270 42.424 4.18e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa3g02758 Pkinase 4.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02758 K08819 - gmx:100776854 743.036