Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02744 ATGACGGAATCAGTCAGTGGAACACCAGCCATGACACCAGACACACCGGGAGGGCCATTATTCTCATCGGTGAGAATTGATTCTATTGAACGTGATTCCTTTGCAAATCCCAGGTGCAATATGTGTATGCCCAAAAATATTGGTGTTCGAATTCCGAGTGTTTCTCTAACTCAGAAGGTTGGAGCAGAGTTTGTAGGAACATTCATACTGATATATGTAGCAACAGCAGGACCAATAGTTAACAACAAATACGAAGGCATAGAAACACTTATAGGAAATGCAGCTTGTGCTGGTTTAACAGTCATGGCAATTATTCTCTCAATTGGTCATATCTCAGGCGCACATCTCAATCCATCACTCACCATTGCGTTCGCGGCGTTTCGCCATTTTCCATGGGCACATGTTCCTGCCTACATTGCAGCACAAGTCTCTGCGTCAATCTGCGCTGCTTTTGCTCTCAAAAGTATTTATCGTCCTTTCCTCTCTGGTGGTGTTACTCTCCCTACCGTTAGCGTTGGACAGGCTTTTGCAACCGAGTTTGTTATCACTTTTATTCTCTTGTTTGTCGCCACTGCTGTTGCTACGGATACTCGCGCAGTTGGTGAAATGGCCGGTATTGCTGTTGGAGCTACAGTTATAGTCAACATTCTGATATCAGGGCCAACAAGTAGTGGTTCAATGAATCCAGTTCGCACCTTAGGTCCAGCCATTGCAGCAGGAAACTACAAAAATATCTGGATATATTTCGTGGCACCGACGCTTGGTGCACTTGCTGGTTCTGGAGCTTATACGCTTGTCAAGCTGCGTGACGAAGATGAAGCTGAACAGCAGCCGCTACCAGTTAGGAGCTTCAGTCACTAG 861 0.4576 MTESVSGTPAMTPDTPGGPLFSSVRIDSIERDSFANPRCNMCMPKNIGVRIPSVSLTQKVGAEFVGTFILIYVATAGPIVNNKYEGIETLIGNAACAGLTVMAIILSIGHISGAHLNPSLTIAFAAFRHFPWAHVPAYIAAQVSASICAAFALKSIYRPFLSGGVTLPTVSVGQAFATEFVITFILLFVATAVATDTRAVGEMAGIAVGATVIVNILISGPTSSGSMNPVRTLGPAIAAGNYKNIWIYFVAPTLGALAGSGAYTLVKLRDEDEAEQQPLPVRSFSH 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02744 286 PANTHER AQUAPORIN NIP2-1 44 271 IPR034294 -
Vifa3g02744 286 FunFam Aquaporin NIP2-1 48 278 - -
Vifa3g02744 286 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g02744 286 PRINTS Major intrinsic protein family signature 58 77 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02744 286 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02744 286 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02744 286 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02744 286 PRINTS Major intrinsic protein family signature 178 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02744 286 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02744 286 Pfam Major intrinsic protein 53 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02744 286 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Vifa3g02744 286 SUPERFAMILY Aquaporin-like 54 273 IPR023271 -
Vifa3g02744 286 Gene3D Glycerol uptake facilitator protein. 45 278 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02744 Vifa-Chr3 760673601 760676559 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02744 20 284 Major Intrinsic Protein MIP AT4G10380 68.592 3.84e-131 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02744 K09874 - gmx:100804356 440.654