Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02742 ATGCCGGAATCGGAGACAGGAACGCCAACCGCCGCGTCGGTGCCGGCGACACCGGAAACACCGGGAGGTCCATTATTCTCGTCGGTGAGAATTGATTCACTCGAACGTGAGTCTTTTGCCATGGGGAGGTGCAACATGTGTATGCCGGGTGGTAAAAGCAATGGTTGCATAGGCGTTCGAATTCCCAGTGTCTCTCTCACTCAGAAGATTGGAGCAGAGTTTGTTGGAACATTCATACTGATATATGCTGCAACAGCAGGACCAATTGTGAACAACAAATACAATGGAGCAGAAACACTTATGGGAAATGCAGCTTGTGCCGGTTTAACAGTCATGTTCATTATTCTCTCAATTGGTCATATCTCAGCACAAGTCTCTGCATCGATCTGTGCTTGCTATGCTCTCAAAGTTGTTTATCACCCTTTCCTCTCTGGTGGTGTCACTGTCCCTACTGTTAGCATTGGACAGGCTTTTGCTACCGAGTTTATCATCACTTTTATTCTCCTCTTCGTTGTTACTGCTGTTGCTACTGATACTCGCGCGGTTGGTGAATTGGCTGGTATTGCTGTTGGAGCTACGGTTCTGCTCAACATTCTCATTTCAGGGCCAACAAGTGGAGGTTCGATGAATCCGGTGCGCACCTTAGGTCCAGCCGTTGCAGCAGGAAACTACAAACATATCTGGATATATTTGGTTGCTCCGACGCTTGGTGCCCTTGCTGGTTCTGGAGTTTATACTCTTGTCAAGCTGCGTGACTACGAAGCTGAACCGGTGCAACCGGTTAGAAGCTTCCGTCGCTAG 801 0.4856 MPESETGTPTAASVPATPETPGGPLFSSVRIDSLERESFAMGRCNMCMPGGKSNGCIGVRIPSVSLTQKIGAEFVGTFILIYAATAGPIVNNKYNGAETLMGNAACAGLTVMFIILSIGHISAQVSASICACYALKVVYHPFLSGGVTVPTVSIGQAFATEFIITFILLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGSGVYTLVKLRDYEAEPVQPVRSFRR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02742 266 Pfam Major intrinsic protein 119 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02742 266 MobiDBLite consensus disorder prediction 1 15 - -
Vifa3g02742 266 Gene3D Glycerol uptake facilitator protein. 123 259 IPR023271 -
Vifa3g02742 266 Gene3D Glycerol uptake facilitator protein. 59 122 IPR023271 -
Vifa3g02742 266 PRINTS Major intrinsic protein family signature 68 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02742 266 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02742 266 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02742 266 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02742 266 PANTHER AQUAPORIN NIP2-1 54 122 IPR034294 -
Vifa3g02742 266 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g02742 266 SUPERFAMILY Aquaporin-like 64 256 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02742 Vifa-Chr3 760631688 760635005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02742 25 266 Major Intrinsic Protein MIP AT4G10380 62.455 7.45e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02742 K09874 - gmx:100804356 435.261