Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02733 ATGCCCACCGCCAAATTATTCATCTCTCTCCTCTGTTTCTCTCTCCTCACTCTCTCCGTCACCGCCCGCCCCTACGTCCTCGTCCTCTCCCAAGAAGACTTCAAAGACGAACCCCCTTCCGATCCCGATTCCTCCCCCGAGTGGGACGAGTTCGGCGACTCCGACTCTCACAAATCCGAAGAGGCACCAAATCTTCGAACCAACCTCCACCCAACCGCAACCTCAACCTCAATCCGATACGGAGGCTCTCTACTACTCCGCCGTGACCAAGCTTATGACAGGAGACGCGAGGCAATCGAAGAAGGCTCTGGTGAGATTGAGACGGCTGCAGAGTCTGGTTACCCGGCGGCACAATCAGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGAGGAGTAAACAGAAAGCATTTGTTTATCATCATTTTGCTTCAGATGGTGGCAATATGCAATCCAAAATGGCTCTTGCTTATACCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTAGCAGAAGTGGCTGTCAATGGTTTTCTCATTTCCAAAGATTCTCCCGTCATTGAACCTATTAGGCTACACAATGGAGCTGAAGAGAACAAAGAGGCACTTAGAAAATCTAAAGGGGAAGAGGATGAGGATTTTCAGATTCTCGAGTATCAGGCACAGAAAGGGAATGCTGCTGCTATCTACAAAGTGGGACTCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGGTTGGCATGTAAATATTTTATAGTGGCTGCCAACAATGGTCAACCAAAGGCTTTCTACCAACTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGCTCTGGTGAGAAAAACAACAGGGGAAGGGATTGGTGCAAGTAAACTAGTAACCATGTCAGACATCGAATTGGAGCAAGGTCAACTTGATAATAAGGAAAAGCCCAAAAGGATACCTCTAACGCGTTTGGCCAAGTTGAACAAGCCTGAAGTTCCTGTCATACTGCTTGGAAGCATTGCTGCAATAATACATGGTGTCGTGTTCCCTATATTTGGCCTGTTGTTTTCATCAGTCATTAGTATGTTTTTTAAACCTCCAGACCAGCAGAGGAAAGAGTCCAGGCTATGGTCACTTCTATATGTAGGTTTGGGTTTCGTTACTCTAGTGGTTTTACCACTGCAGAATTACTTCTTTGGGATTGCTGGTGGAAAACTTATTGAAAGAGTTCGTTCATTGACATTTGAAAAGATTGTGCACCAAGAAATTAGATGGTTTGACAATCCTGCAAATTCAAGTGGTGCAGTAGGTGCAAGGCTATCTACCGACGCTTCAACTGTGAAAAGTCTTGTTGGTTTCTCTTTTTTAGCTCTATATTGCACAAATGCTTTCACTTTCTACATAGGATCTATTTTAGTGCAACACGGGAAAGCAACGTTTCAAGAGGTTTTCAGGGTTTTCTTTTGTTTAACAATGACAGCAATCTCCGTTTCACAGTCTAGTGCTTTGGCACCAGACGCTAACAAGGCGAAAGATTCCACAACTTCAATATTTGAAATTCTTGACAGCAAACCTGATATTGATTCCAGCAGCAAGGAGGGTGTAATGCAAGAAACGGTAGTTGGTAAACCTAAGCTGTCAAAAGCTGTGCAATATTCCTCAGAGATAAGAAAGCTAAAGTTAGAACTAAAGCAAGAACGTGATCAGTTGGCCGATATTCAACTAAATTTTCGTGAGGAACAGGAATCAAACAACTCTTTCCGGGAGGAGCTTAAAATGTTAAAGTTGGAAAGAGAAAAAACATCAAAGGAGCTGAGAAAAGTACAATATGAATTGAATGTGAAAGCATCCGAAATAAAACATCCGAAATAA 2232 0.4337 MPTAKLFISLLCFSLLTLSVTARPYVLVLSQEDFKDEPPSDPDSSPEWDEFGDSDSHKSEEAPNLRTNLHPTATSTSIRYGGSLLLRRDQAYDRRREAIEEGSGEIETAAESGYPAAQSVLGFLWGMGLLRERSKQKAFVYHHFASDGGNMQSKMALAYTYTRQDMFDKSVKLYAELAEVAVNGFLISKDSPVIEPIRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAIYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRLACKYFIVAANNGQPKAFYQLAKIFHLGVGFKKNVPLALVRKTTGEGIGASKLVTMSDIELEQGQLDNKEKPKRIPLTRLAKLNKPEVPVILLGSIAAIIHGVVFPIFGLLFSSVISMFFKPPDQQRKESRLWSLLYVGLGFVTLVVLPLQNYFFGIAGGKLIERVRSLTFEKIVHQEIRWFDNPANSSGAVGARLSTDASTVKSLVGFSFLALYCTNAFTFYIGSILVQHGKATFQEVFRVFFCLTMTAISVSQSSALAPDANKAKDSTTSIFEILDSKPDIDSSSKEGVMQETVVGKPKLSKAVQYSSEIRKLKLELKQERDQLADIQLNFREEQESNNSFREELKMLKLEREKTSKELRKVQYELNVKASEIKHPK 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02733 743 SUPERFAMILY HCP-like 107 179 - -
Vifa3g02733 743 Gene3D Tetratricopeptide repeat domain 197 306 IPR011990 GO:0005515
Vifa3g02733 743 Pfam Sel1 repeat 346 377 IPR006597 -
Vifa3g02733 743 Pfam Sel1 repeat 115 150 IPR006597 -
Vifa3g02733 743 Pfam Sel1 repeat 307 341 IPR006597 -
Vifa3g02733 743 Pfam Sel1 repeat 271 303 IPR006597 -
Vifa3g02733 743 Pfam Sel1 repeat 233 268 IPR006597 -
Vifa3g02733 743 Gene3D ABC transporter type 1, transmembrane domain 413 652 IPR036640 GO:0005524|GO:0016020
Vifa3g02733 743 MobiDBLite consensus disorder prediction 33 74 - -
Vifa3g02733 743 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 198 309 - -
Vifa3g02733 743 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 456 600 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02733 743 SMART sel1 115 150 IPR006597 -
Vifa3g02733 743 SMART sel1 270 305 IPR006597 -
Vifa3g02733 743 SMART sel1 343 378 IPR006597 -
Vifa3g02733 743 SMART sel1 306 342 IPR006597 -
Vifa3g02733 743 SMART sel1 233 269 IPR006597 -
Vifa3g02733 743 Pfam ABC transporter transmembrane region 456 575 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g02733 743 MobiDBLite consensus disorder prediction 50 64 - -
Vifa3g02733 743 SUPERFAMILY HCP-like 308 403 - -
Vifa3g02733 743 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 403 IPR044623 GO:0030433
Vifa3g02733 743 SUPERFAMILY ABC transporter transmembrane region 435 646 IPR036640 GO:0005524|GO:0016020
Vifa3g02733 743 Coils Coil 669 733 - -
Vifa3g02733 743 SUPERFAMILY HCP-like 214 323 - -
Vifa3g02733 743 CDD ABC_6TM_Pgp_ABCB1_D2_like 445 647 - -
Vifa3g02733 743 Gene3D Tetratricopeptide repeat domain 93 194 IPR011990 GO:0005515
Vifa3g02733 743 Gene3D Tetratricopeptide repeat domain 307 404 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02733 Vifa-Chr3 756964494 756968413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02733 572 648 Calmodulin-binding Proteins AT2G36910 35.065 4.77e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02733 K14026 - psat:127101456 684.485