Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02730 ATGGAAAGTACTGTCTCTCATAGTGTCACTACTTTCTTGTTTTTCTTTCTGTTTATTTGTGTGATGGAAGTGAGTTCTATATCACCTGATGGACAAGCACTTCTTTCTCTTGCAACTTCATCACCTTCTCTTCTCTCTTCATGGAACCCTTCAACCTCAACACCATGTTCATGGAAAGGTGTAACTTGTTCACCACAATCTAGAGTCATTTCACTTTCTATCCCTGACACTTTCCTTAATCTCTCTTCTTTACCACCTCAACTATCCTCTTTAACAATGCTTCAGCTTCTGAATCTCTCTTCCACAAATCTCTCTGGCTCCATCCCTCCCTCTTTTGGTCAACTCTTCCATCTTCAACTCCTTGATATCTCCTCAAACTCTCTCACTGGTTCAATTCCTAATGAACTTGGAAACTTATATTCTCTTCAATTCATTTTCTTGAACTCAAACAGGTTAACAGGAACCATTCCACAACAGTTTTCGAATCTCACTTCACTTGAAGTTCTTTGTCTTCAAGATAATCTTCTCAACGGTTCAATCCCTTCACAGCTAGGCTCCTTGAAATCTCTTCAACAGTTTAGGATTGGTGGTAACCCTTATCTCACAGGAGAACTTCCTCCACAGTTAGGACTATTAACCAACCTCACCACATTCGGTGCAGCTGCAACTTCGCTTACTGGTTCGATTCCTTCCACATTCGGAAACTTGGTCAATCTACAAACTCTAGCACTTTATGATACTGAAATTTCTGGTTCAGTACCATCGGAACTCGGTTTATGTTCGGAGTTGAGAAATATTTATTTACATATGAACAATCTCAGTGGCTCTATCCCTCATGAATTAGGTAAGTTGCAAAAACTTACTAGTTTGCTTCTTTGGGGAAACACATTGTCTGGTGAAATCCCTTCTGAAATTTCCAACTGTTCAGCATTAGTAATATTTGATGTATCTTCTAATGATCTATCTGGTGAAATACCCGGGGATTTCGGGAAGCTAGTTGTTCTAGAACAGCTTCATTTGTCTGACAACTCGCTCAGCGGTGAAATACCGTGGCAGTTGAGCAACTGCACAAGCCTCGCAACGGTTCAGCTTGATAAGAATCAGTTATCAGGTACAATTCCTTATCAGGTTGGGAAGTTGAAGGTTCTGCAGAGTTTTTTCTTGTGGGGGAATTTGGTTTCTGGAACTATACCGTCTTCTTTCGGAAACTGTACTGAACTTTATGCACTTGATCTTTCAAGGAATAAGCTAACAGGTTCGATTCCAGAAGAGATTTTCGGTTTGCAGAAGCTGAGTAAGCTTCTGCTTCTTGGAAACTCATTAACAGGAAAGTTGCCAGCAAGTGTTGCAAATTGTCAGTCTTTGGTTAGATTGAGAGTTGGAGAGAATCAGCTTTCAGGAGAGATTCCTAAAGAGATAGGACAGTTACAGAATCTGGTTTTTCTTGATTTGTACATGAATCATTTCTCCGGAAGATTACCTGTTGAGATTGCCAATATTACAGTTCTTGAGCTTTTAGATGTGCATAACAACTACCTCGGCGGAGAAATTCCGTCGCTGATTGGTGAACTTGAAAATTTGGAGCAGCTTGATCTAAGTAAGAATAGTTTGACAGGTGAAATTCCTCGGAGTTTCGGAAACTTGAGTTATTTGAATAAGCTTATTCTCAACAATAATTTGTTGACAGGTTCAATACCAAAATCTGTTAGAAATTTGCAGAAGCTGACTCTATTAGATTTGAGTTATAACAGCTTATCTGGTTGCATACCTCAAGAGATTGGTCATGTTACAAGCTTAACCATAAGTTTGGATTTGAGCTCGAATGCATTCACCGGCGAAATTCCTGATTCAATGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCAAGGAACGTGCTTCATGGCGGAATTAAGGTTCTTGGTTCTTTAACTAGTCTTACTTGGCTTAATATCTCGTATAACAACTTCTCGGGTCCTATTCCGATAACTCCATTTTTCAAAACTATAACTTCTACTTCATATCTTCAGAACTTTCATCTGTGTCAGTCTATTGATGGTACTACTTGTTCTTCAAGTCTGCTTCGGAAAAATGGTTTAAAATCTGCTAAAACTGTGGCTATGATCACGATTATTCTAGCTTCCGTTACTATAATTGTCATTGCATCGTGGATTCTAGTAACTCGTAGTAATCATCGATACATGGTTGAGAAAGCTTTGAGGAAATCAGGTTCAGCGTCAGGAGGCGAGGATTTCTCGTATCCTTGGACTTTCATACCGTTTCAGAAACTGAATTTCAGCATAGATAACATCTTGGATTGCTTGAAAGACGAAAATGTGATCGGAAAAGGTTGTTCTGGTGTTGTTTACAAGGCTGAGATGCCGCACGGAGAAGTGATAGCAGTGAAGAAGCTTTGGAAAACAAACAAAGGTGATGAAATGGTGGATTCTTTTGCTGCTGAGATTCAGATTCTCGGCTACATTCGGCATAGAAATATCGTAAGGCTCATAGGTTATTGTTCTAATGGGAGTGTTAAGCTTCTTCTCTATAACTTCATCCAAAATGGTAATCTAAAACAGCTTTTGGAAGGGAATAGGAACCTAGACTGGGAAACTCGATACAAGATAGCTGTTGGTTCCGCGCAAGGTCTAGCTTACCTTCACCATGATTGTGTTCCAACAATTCTTCACAGAGATGTTAAGTGCAATAACATTCTTTTAGATTCCAAATTCGAGGCTTATCTCGCAGATTTCGGCCTTGCGAAGCTAATGAGTTCGCCGAATTATCATCAAGCAATGTCCAGAGTTGCTGGTTCCTATGGCTACATTGCACCAGAGTATGGCTACACCATGAACATAACCGAAAAGAGCGACGTGTACAGTTACGGAGTGGTTTTACTCGAGATACTAAGTGGAAGAAGTGCGGTTGAATCTCCACATATAGGAGATGATGGACAACACATAGTTGAATGGGTGAAGAAGAAAATGGCAAGCTTCGAACCAGCAGTGTCGATACTAGACACGAAGCTGCAAAGTCTACCAGATCAAATGGTGCAAGAGATGCTACAAACACTCGGAATTGCTATGTTTTGTGTGAATTCTTCGCCGGTTGAACGGCCAACTATGAAGGAAGTTGTTGCATTACTGATGGAAGTGAAGAGTCAGCCTCATGAGGAGATGGGGAAAACCTCACAGCCTTTGATTAAGCAGTCCTCAACTCAATGCTGA 3228 0.4027 MESTVSHSVTTFLFFFLFICVMEVSSISPDGQALLSLATSSPSLLSSWNPSTSTPCSWKGVTCSPQSRVISLSIPDTFLNLSSLPPQLSSLTMLQLLNLSSTNLSGSIPPSFGQLFHLQLLDISSNSLTGSIPNELGNLYSLQFIFLNSNRLTGTIPQQFSNLTSLEVLCLQDNLLNGSIPSQLGSLKSLQQFRIGGNPYLTGELPPQLGLLTNLTTFGAAATSLTGSIPSTFGNLVNLQTLALYDTEISGSVPSELGLCSELRNIYLHMNNLSGSIPHELGKLQKLTSLLLWGNTLSGEIPSEISNCSALVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLSGEIPWQLSNCTSLATVQLDKNQLSGTIPYQVGKLKVLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGSIPEEIFGLQKLSKLLLLGNSLTGKLPASVANCQSLVRLRVGENQLSGEIPKEIGQLQNLVFLDLYMNHFSGRLPVEIANITVLELLDVHNNYLGGEIPSLIGELENLEQLDLSKNSLTGEIPRSFGNLSYLNKLILNNNLLTGSIPKSVRNLQKLTLLDLSYNSLSGCIPQEIGHVTSLTISLDLSSNAFTGEIPDSMSALTQLQSLDLSRNVLHGGIKVLGSLTSLTWLNISYNNFSGPIPITPFFKTITSTSYLQNFHLCQSIDGTTCSSSLLRKNGLKSAKTVAMITIILASVTIIVIASWILVTRSNHRYMVEKALRKSGSASGGEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKAEMPHGEVIAVKKLWKTNKGDEMVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVKLLLYNFIQNGNLKQLLEGNRNLDWETRYKIAVGSAQGLAYLHHDCVPTILHRDVKCNNILLDSKFEAYLADFGLAKLMSSPNYHQAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVESPHIGDDGQHIVEWVKKKMASFEPAVSILDTKLQSLPDQMVQEMLQTLGIAMFCVNSSPVERPTMKEVVALLMEVKSQPHEEMGKTSQPLIKQSSTQC 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02730 1075 Gene3D Phosphorylase Kinase; domain 1 754 852 - -
Vifa3g02730 1075 Gene3D Ribonuclease Inhibitor 567 692 IPR032675 -
Vifa3g02730 1075 SUPERFAMILY L domain-like 41 393 - -
Vifa3g02730 1075 Pfam Protein kinase domain 777 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02730 1075 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 751 852 - -
Vifa3g02730 1075 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 423 694 - -
Vifa3g02730 1075 PRINTS Leucine-rich repeat signature 407 420 - -
Vifa3g02730 1075 PRINTS Leucine-rich repeat signature 524 537 - -
Vifa3g02730 1075 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 307 1049 - -
Vifa3g02730 1075 SMART serkin_6 775 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02730 1075 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 27 183 - -
Vifa3g02730 1075 SUPERFAMILY Protein kinase-like (PK-like) 759 1049 IPR011009 -
Vifa3g02730 1075 Gene3D Ribonuclease Inhibitor 276 373 IPR032675 -
Vifa3g02730 1075 Gene3D Ribonuclease Inhibitor 374 469 IPR032675 -
Vifa3g02730 1075 Gene3D Ribonuclease Inhibitor 179 275 IPR032675 -
Vifa3g02730 1075 Gene3D Ribonuclease Inhibitor 29 178 IPR032675 -
Vifa3g02730 1075 Pfam Leucine rich repeat 383 441 IPR001611 GO:0005515
Vifa3g02730 1075 Pfam Leucine rich repeat 142 198 IPR001611 GO:0005515
Vifa3g02730 1075 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Vifa3g02730 1075 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 199 422 - -
Vifa3g02730 1075 SMART LRR_typ_2 284 308 IPR003591 -
Vifa3g02730 1075 SMART LRR_typ_2 524 547 IPR003591 -
Vifa3g02730 1075 SMART LRR_typ_2 572 596 IPR003591 -
Vifa3g02730 1075 SMART LRR_typ_2 163 187 IPR003591 -
Vifa3g02730 1075 SMART LRR_typ_2 332 356 IPR003591 -
Vifa3g02730 1075 SMART LRR_typ_2 404 428 IPR003591 -
Vifa3g02730 1075 SMART LRR_typ_2 91 115 IPR003591 -
Vifa3g02730 1075 SMART LRR_typ_2 621 651 IPR003591 -
Vifa3g02730 1075 SMART LRR_typ_2 236 260 IPR003591 -
Vifa3g02730 1075 SMART LRR_typ_2 139 162 IPR003591 -
Vifa3g02730 1075 Gene3D Transferase(Phosphotransferase) domain 1 853 1072 - -
Vifa3g02730 1075 SUPERFAMILY L domain-like 373 687 - -
Vifa3g02730 1075 ProSitePatterns Protein kinases ATP-binding region signature. 781 804 IPR017441 GO:0005524
Vifa3g02730 1075 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Vifa3g02730 1075 Pfam Leucine rich repeat N-terminal domain 29 64 IPR013210 -
Vifa3g02730 1075 ProSiteProfiles Protein kinase domain profile. 775 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02730 1075 Gene3D Ribonuclease Inhibitor 470 566 IPR032675 -
Vifa3g02730 1075 Pfam Leucine Rich Repeat 526 548 IPR001611 GO:0005515
Vifa3g02730 1075 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515
Vifa3g02730 1075 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 853 1067 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02730 Vifa-Chr3 755589288 755592600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02730 26 1069 Receptor kinase-like Gene Family AT5G56040 44.695 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g02730 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02730 - - tpra:123903867 1881.69