Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02719 ATGGCGGCTGCGATTTCTTCACAGATTGCTCAGTCTGCGACTGTCGTGGCTCCGATGACGGCGGCATTAACCGGAGGACCGTTTGCGAATGCATCGCTTTACGTAGGCGATCTTGAAGGGAGTGTGATCGAGGCACAGCTTTTTGAACTCTTTAGCCCAGTGGCTCCGGTTTTGTCGATCAGGGTTTGCAGGGATCAGACCTCGAGAACTTCTCTTGGTTACGCTTATGTTAACTTCACCAACGCTCAGGAAGCGGCCAATGCCAAGGAACTACTCAACTTCACTCCTTTGAATGGGAAGCCCATTCGGATTATGTTTTCTCAACGAGATCCAAGTGTTCGGAAAAGTGGACATGGAAATGTGTTCATTAAGAATTTGGACGCCTTGATTGATAACAAGGCATTATATGACACTTTTGCTACCTTTGGCTCAGTTCTTTCTTGTAAGGTGGTTCTCGACAGTAGTGGCCAGTCAAAAGGACACGGTTTTGTGCAGTTTGACAACGAAAAAGATGCGAAGAGTGCCATCAAACAATTGAATGGAATGCGGATTAATGATAAACAAGTCTATGTTGGATCTTTTGTTCGCCGTCAGGAAAGGGCTAGGACAAATGGATCACCCAAGTTCACTAATGTGTATGTGAAAAATTTGTCTGAAACAGTAAATGATGAAGAACTGAAACATCTATTTGGCCCCTTTGGAACGATAACTAGTGCAACAATCATGAAAGATACAAATGGGAAATCTAGAGGTTTTGGTTTTGTGAATTTCCAGAGTCCAGATTCAGCTGCTACTGCAGTCGAGAAGTTAAATGGAACCACCATCAATGATGACAAGGTTTTATTTGTTGGGCGAGCTCAGAGAAAAGCAGAACGAGAGCATGAATTGAAAGTCAAATTTGAACAAGAAAGAATTAGCCGATATGAGAAATTACAAGGGGCTAATTTGTACTTGAAAAATCTTGATGATGGTTTTAGTGATGAAAAGTTGAAGGATCTGTTTTCTGAATTTGGTACTATAACTTCTTGCAGGGTGATGTTGGATTCACATGGTCAGAGCAAGGGTTCCGGTTTTGTGGCCTTCTCTACGCCGGAGGAAGCAAGCAGAGCTTTGAAGGAAATGAATGGGAAGTTGGTTGGAAGAAAGCCTCTGTTTGTTGCTGTGGCCCAACGCAAAGAAGAGAGAAAGGCCCAGTTGCAGGCTCAATTTGCTCAAATTCGTGCCACCGCTGGAATGGCAACTATGGCTACAGGAATTTTTGGATACGGGTCTCCGAGACTTGCTCCTCAACAGTTATATTACGGTCAAGGCACACCTGGTTTCATACCATCTCAGCCTGCTGGATTTGGTTTTCAACCGCAAATCTTGCCTGGAATGCGACCTGTTGTTGCTCCAAACTTTGCTATGCCATTTCAAAGACAAAGAATAGGTACCGGACGAAATGGAAACCTCCAACACCTCCCGCAAAATCAAATGTTACAAGGTAATTCAAACCAAGGGTTTAGATATATGGCCAACAATCGAAATGGTGTAGATACTTCTGGAATTCATGCCTCTTCTATTGATAATCAGCGTTCCAGGTCTACGTCACTTGCATCAGATTTAGCTTCTGCTACTCCAGAAAATCAGCGTATGATATTGGGTGAACATCTATATCCACTTGTAAAACATGTTACACCAAATCAATATACTGCTAAGGTTACAGGAATGTTGCTTGAAATGGATCGGGCAGAAGTAATTCATCTTATTGAATCTCCAGATGATTTAAAACAAAAAGTTTACGAGGCATTGCAAGTCCTCCATGACGAGGCATTGCAAGTCCTCCATGACGCGGCATCAAGATCTGAAGTTGGAGATCAACTTGGTTAG 1869 0.4307 MAAAISSQIAQSATVVAPMTAALTGGPFANASLYVGDLEGSVIEAQLFELFSPVAPVLSIRVCRDQTSRTSLGYAYVNFTNAQEAANAKELLNFTPLNGKPIRIMFSQRDPSVRKSGHGNVFIKNLDALIDNKALYDTFATFGSVLSCKVVLDSSGQSKGHGFVQFDNEKDAKSAIKQLNGMRINDKQVYVGSFVRRQERARTNGSPKFTNVYVKNLSETVNDEELKHLFGPFGTITSATIMKDTNGKSRGFGFVNFQSPDSAATAVEKLNGTTINDDKVLFVGRAQRKAEREHELKVKFEQERISRYEKLQGANLYLKNLDDGFSDEKLKDLFSEFGTITSCRVMLDSHGQSKGSGFVAFSTPEEASRALKEMNGKLVGRKPLFVAVAQRKEERKAQLQAQFAQIRATAGMATMATGIFGYGSPRLAPQQLYYGQGTPGFIPSQPAGFGFQPQILPGMRPVVAPNFAMPFQRQRIGTGRNGNLQHLPQNQMLQGNSNQGFRYMANNRNGVDTSGIHASSIDNQRSRSTSLASDLASATPENQRMILGEHLYPLVKHVTPNQYTAKVTGMLLEMDRAEVIHLIESPDDLKQKVYEALQVLHDEALQVLHDAASRSEVGDQLG 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02719 622 Gene3D - 296 403 IPR012677 -
Vifa3g02719 622 Gene3D - 194 295 IPR012677 -
Vifa3g02719 622 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 527 605 IPR002004 GO:0003723
Vifa3g02719 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 191 IPR000504 GO:0003723
Vifa3g02719 622 FunFam Polyadenylate-binding protein 297 402 - -
Vifa3g02719 622 Gene3D - 120 193 IPR012677 -
Vifa3g02719 622 SUPERFAMILY RNA-binding domain, RBD 31 198 IPR035979 GO:0003676
Vifa3g02719 622 FunFam Polyadenylate-binding protein 8 113 - -
Vifa3g02719 622 CDD RRM2_I_PABPs 117 192 IPR045305 -
Vifa3g02719 622 PANTHER RNA BINDING PROTEIN 30 93 - -
Vifa3g02719 622 Coils Coil 389 409 - -
Vifa3g02719 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 279 IPR000504 GO:0003723
Vifa3g02719 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 383 IPR000504 GO:0003723
Vifa3g02719 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Vifa3g02719 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Vifa3g02719 622 SMART poly_2 539 603 IPR002004 GO:0003723
Vifa3g02719 622 Gene3D - 27 119 IPR012677 -
Vifa3g02719 622 SMART rrm2_1 120 192 IPR003954 GO:0003676
Vifa3g02719 622 SMART rrm2_1 315 387 IPR003954 GO:0003676
Vifa3g02719 622 SMART rrm2_1 211 283 IPR003954 GO:0003676
Vifa3g02719 622 SUPERFAMILY PABC (PABP) domain 467 601 IPR036053 GO:0003723
Vifa3g02719 622 FunFam Polyadenylate-binding protein 201 296 - -
Vifa3g02719 622 CDD RRM3_I_PABPs 209 289 - -
Vifa3g02719 622 SUPERFAMILY RNA-binding domain, RBD 209 395 IPR035979 GO:0003676
Vifa3g02719 622 SMART rrm1_1 120 192 IPR000504 GO:0003723
Vifa3g02719 622 SMART rrm1_1 315 387 IPR000504 GO:0003723
Vifa3g02719 622 SMART rrm1_1 211 284 IPR000504 GO:0003723
Vifa3g02719 622 SMART rrm1_1 32 105 IPR000504 GO:0003723
Vifa3g02719 622 CDD RRM4_I_PABPs 313 391 - -
Vifa3g02719 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Vifa3g02719 622 FunFam Polyadenylate-binding protein 114 200 - -
Vifa3g02719 622 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 600 IPR006515 GO:0003723
Vifa3g02719 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Vifa3g02719 622 Gene3D - 523 607 - -
Vifa3g02719 622 Pfam Poly-adenylate binding protein, unique domain 535 600 IPR002004 GO:0003723
Vifa3g02719 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02719 Vifa-Chr3 753201713 753205921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02719 30 621 Eukaryotic Initiation Factors Gene Family AT1G71770 54.777 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02719 K13126 - gmx:100783163 912.138