Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02709 ATGGGTGCGGTTTCGGAATCTGCCTCTGCTGATTGTTTCAGTGAGGTGATGTCGTCCATGCCCGGTTTTCGATTCCACCCCACCGATGAGGAGTTGGTGATGTACTATCTGAAACGGAAGATTTGTGGGAAAAAGTTGAAGTTCAACGTGATTTGTGAAACCGATGTTTACAAGTGGGATCCTGAGGATTTACCTGGGCAATCTTTCCTGAAAACTGGAGATAGACAATGGTTCTTTTTCTGTCATAGAGATAGGAAATATCCTAATGGTGCAAGGTCTAATCGAGCAACAAGACATGGCTATTGGAAAGCTACAGGAAAAGATCGTAATGTGATATTCAATTCTCGGTCAGTTGGAGTGAAAAAGACACTGGTTTTCTATATCGGCAGAGCTCCTAATGGCGAGCGAACTGATTGGGTTATGCATGAATACACCATGGATGAAGAGGAGTTTAAGAGATGCTGCAATGTCAAGGGCTATTATGCACTTTACAAGGTTTTCAAGAAAAGTGGACCGGGTCCTAAGAACGGTGAACAGTATGGTGCACCATTTAAAGAAGAAGAATGGGCAGATGACGATGTTGTAGATTTTAATGTAAATTCAGCTGAGCGGGAGGCTCCAAATGCTGTAATGGACCCTCCTATTGATCAGCTGCAGCCGTTGTTGGATGATGAAATCGATGAAATCATTAAAGCGATGTTTGATGTTGAGCCTGTCCTTGAACAGGATTATGTGAATGGTTATACCGACTTTCCACAGGTTGTTAATGAAGAAACACAAAGTATGGTCTTGGGTCAGTTCTCTGAGACCATGATATTCCCTGATCCTGGTGGAAATTTGCAATCTAGCACACCCGAAGTCACTTCTGCTTCCAACATTCAAAGCGAGGAGGAGCCTGTCTTTTATGAGGACGGCTTCTTGGAAATCAACGATCTCTTCGATACCGAACCTACAGTTTCAAATTCGGAAAAGCATAATGAGGATCTCTTTGAGAAGCCTCCAAAGTTACCAATCAAACTGTTGATGAATTCTGGATGCATGTTGAAAGAAAACACCCGCAGTCCCACAGAAGACTTCAACGGTTCTTTCTCTCTAACAAATCCAGGTGTTGTGTGTGACTCTGTCAGCTTTCCTACTGAAAGCACTGAAAATAGACGAAACACTATGGAAGATGTTGCTACTACAAGTAGAATCTCCTCTGCTCTTTGGGCTTTTGTTGATTCAATACCTACCACTCCTGCATCAGCCGCCGAAAACCCTTTGGTGAACCGGGCTTTGAATAGAATGTCTAGCTTCAGCATGATGAAGATGAAGCCCGCTGACATCACTGCAGACAGAGGAGCATGA 1347 0.435 MGAVSESASADCFSEVMSSMPGFRFHPTDEELVMYYLKRKICGKKLKFNVICETDVYKWDPEDLPGQSFLKTGDRQWFFFCHRDRKYPNGARSNRATRHGYWKATGKDRNVIFNSRSVGVKKTLVFYIGRAPNGERTDWVMHEYTMDEEEFKRCCNVKGYYALYKVFKKSGPGPKNGEQYGAPFKEEEWADDDVVDFNVNSAEREAPNAVMDPPIDQLQPLLDDEIDEIIKAMFDVEPVLEQDYVNGYTDFPQVVNEETQSMVLGQFSETMIFPDPGGNLQSSTPEVTSASNIQSEEEPVFYEDGFLEINDLFDTEPTVSNSEKHNEDLFEKPPKLPIKLLMNSGCMLKENTRSPTEDFNGSFSLTNPGVVCDSVSFPTESTENRRNTMEDVATTSRISSALWAFVDSIPTTPASAAENPLVNRALNRMSSFSMMKMKPADITADRGA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02709 448 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Vifa3g02709 448 FunFam Nac domain-containing protein 86 28 172 - -
Vifa3g02709 448 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 279 - -
Vifa3g02709 448 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Vifa3g02709 448 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Vifa3g02709 448 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02709 Vifa-Chr3 750468691 750474287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02709 4 437 NAC Transcription Factor Family AT1G34190 43.714 7.52e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g02709 NAM 4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02709 - - mtr:25485018 665.996