Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02708 ATGGCCTCCTCTCAGGCCCAACATCGCTGTGTCTTCGTTGGGAATATACCGTATGATGCAACCGAAGAACAGCTTATTGAAATCTGCCAGGAAGTTGGTCCTGTAGTTTCTTTCAGATTAGTTATTGATAGAGAAACTGGGAAACCAAAAGGTTATGGATTTTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGCAGGAATCTTCAGGGCTATGAGATTAATGGGCGTCAATTACGTGTTGATTTTGCTGAAAACGATAAAGGGAACGATAGAAATAAAGATCAGGGTCGCGGAGGACCAGGAATGACACCAGTTGTTGACCCTCAGAAACAAGTAGGCATCCCAGCTGTCCAAGGGGAATCTCCTCAAGCAGCTCCACATCAGCCTATTGGTCTTCATTTTGCCACAACAGCTGCAGCTGTCATGACTGCAGCTCTAGGTGGCGCTCAGACTGGCATCCAGTCAAATCAAAATGGTTTGCATAATCAGTCAGCATTTACAAATGATCCTTTAACTTCGCATCTGGCCAAAATGTCTAGGAGTCAGCTGACTGAGATAATCTCTGAGGTTAAGGGAATGGCTACACACAACAAGGAACTGTCTCGCCAGCTGTTGCTTTCAAGGCCACAATTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCACCCCTTCAATGCTACAAATGCCAAATCTTAGACAAGTTTCAGATCAAACCTCGCAGTTAAAAAATGAAGGCCACATTGGTCAGACTCAACAAACATTGGCTCAAACCGTGGCTGGTGTACCTCCTTATGGACAGAGCAAATTGCAGTCTGGCTTGACACCTTACATTCAAGAAGGGCAAGCCAACACTCTACCTCATAACCCTTTGGCTTCTAATCAATCAACCGCAAATCCAAGGCCTCCACTGCAGCCTAGAATTCCCCTTCAGCATCACCCAAGCAACCATTTTGTACAGCCTGGAACAGGGCAGAATAATTTAATACTTCCTTCTGTACGTCCCCCAACTTTGGGAAGTTTGTCTATTAGGCTTCCAAATCAGCCAGTAAATTCAACTGCAATGAACCAGCAAATGCATGGCTCGTTCCTTCAGCATCCAGTTCGTGTTGGAAGTTCAACTGTCTCACATAATGTTCCAATGGCTGACCCCTCCGTGTCATCTGGTACTTCCCAGTTATTTAGTAAGGAAGGTGATAGATCTTCCAAAGCTCCTGAGGAATGGACCAAAAATAGTAGTAATTATTCAAACATGTCTGCGGGATTAGAGAATATAGGCATCACTCGTGATATTCCAGAATCCTTCACTCGCCCGGTAAAGCTCACTAGATTGAATGAGGGAAGGAAATCCTCTCTCGCATCTGGGACTTTAGACGTGCCTGTCTCCAACGGATCATCCCATGTTCCTGGAAGTAGTTTATTATCCGCACCTGCAGTTCCTAAATCAGAAGTGCGGCAACCTGACCAACAATCTTCACAGCTTCCATCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTAACACCGGAGCAATTGAGTTCCCTGCCACCAGAGCAGCAACAGCAGGTCATCCAACTCCAACAAGCTCTTAAGCGAGATCAGATGCAACCTGCATAA 1638 0.4548 MASSQAQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNKDQGRGGPGMTPVVDPQKQVGIPAVQGESPQAAPHQPIGLHFATTAAAVMTAALGGAQTGIQSNQNGLHNQSAFTNDPLTSHLAKMSRSQLTEIISEVKGMATHNKELSRQLLLSRPQLPKALFQAQIMLGMVTPSMLQMPNLRQVSDQTSQLKNEGHIGQTQQTLAQTVAGVPPYGQSKLQSGLTPYIQEGQANTLPHNPLASNQSTANPRPPLQPRIPLQHHPSNHFVQPGTGQNNLILPSVRPPTLGSLSIRLPNQPVNSTAMNQQMHGSFLQHPVRVGSSTVSHNVPMADPSVSSGTSQLFSKEGDRSSKAPEEWTKNSSNYSNMSAGLENIGITRDIPESFTRPVKLTRLNEGRKSSLASGTLDVPVSNGSSHVPGSSLLSAPAVPKSEVRQPDQQSSQLPSDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALKRDQMQPA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02708 545 SUPERFAMILY RNA-binding domain, RBD 6 104 IPR035979 GO:0003676
Vifa3g02708 545 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Vifa3g02708 545 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 2 541 - -
Vifa3g02708 545 FunFam Cleavage stimulating factor 64 160 235 - -
Vifa3g02708 545 MobiDBLite consensus disorder prediction 451 501 - -
Vifa3g02708 545 MobiDBLite consensus disorder prediction 321 338 - -
Vifa3g02708 545 CDD RRM_CSTF2_RNA15_like 9 85 - -
Vifa3g02708 545 Gene3D - 500 544 IPR038192 -
Vifa3g02708 545 Pfam Transcription termination and cleavage factor C-terminal 507 539 IPR026896 GO:0031124
Vifa3g02708 545 Pfam Hinge domain of cleavage stimulation factor subunit 2 169 233 IPR025742 -
Vifa3g02708 545 Gene3D - 1 109 IPR012677 -
Vifa3g02708 545 MobiDBLite consensus disorder prediction 286 338 - -
Vifa3g02708 545 MobiDBLite consensus disorder prediction 286 306 - -
Vifa3g02708 545 SMART rrm1_1 10 83 IPR000504 GO:0003723
Vifa3g02708 545 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Vifa3g02708 545 MobiDBLite consensus disorder prediction 379 423 - -
Vifa3g02708 545 MobiDBLite consensus disorder prediction 84 110 - -
Vifa3g02708 545 FunFam Cleavage stimulating factor 64 2 118 - -
Vifa3g02708 545 Gene3D - 154 235 - -
Vifa3g02708 545 MobiDBLite consensus disorder prediction 452 477 - -
Vifa3g02708 545 MobiDBLite consensus disorder prediction 379 403 - -
Vifa3g02708 545 FunFam Related to Cleavage stimulation factor 498 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02708 Vifa-Chr3 750435296 750440034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02708 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.13e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02708 K14407 - gmx:100794399 723.391