Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02707 ATGGCCTCCTCTCAGGCCCAACATCGCTGTGTCTTCGTTGGGAATATACCGTATGATGCAACCGAAGAACAGCTTATTGAAATCTGCCAGGAAGTTGGTCCTGTAGTTTCTTTCAGATTAGTTATTGATAGAGAAACTGGGAAACCAAAAGGTTATGGATTTTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGCAGGAATCTTCAGGGCTATGAGATTAATGGGCGTCAATTACGTGTTGATTTTGCTGAAAACGATAAAGGGAACGATAGAAATAAAGATCAGGGTCGCGGAGGACCAGGAATGACACCAGTTGTTGACCCTCAGAAACAAGTAGGCATCCCAGCTGTCCAAGGGGAATCTCCTCAAGCAGCTCCACATCAGCCTATTGGTCTTCATTTTGCCACAACAGCTGCAGCTGTCATGACTGCAGCTCTAGGTGGCGCTCAGACTGGCATCCAGTCAAATCAAAATGGTTTGCATAATCAGTCAGCATTTACAAATGATCCTTTAACTTCGCATCTGGCCAAAATGTCTAGGAGTCAGCTGACTGAGATAATCTCTGAGGTTAAGGGAATGGCTACACACAACAAGGAACTGTCTCGCCAGCTGTTGCTTTCAAGGCCACAATTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCACCCCTTCAATGCTACAAATGCCAAATCTTAGACAAGTTTCAGATCAAACCTCGCAGTTAAAAAATGAAGGCCACATTGGTCAGACTCAACAAACATTGGCTCAAACCGTGGCTGGTGTACCTCCTTATGGACAGAGCAAATTGCAGTCTGGCTTGACACCTTACATTCAAGAAGGGCAAGCCAACACTCTACCTCATAACCCTTTGGCTTCTAATCAATCAACCGCAAATCCAAGGCCTCCACTGCAGCCTAGAATTCCCCTTCAGCATCACCCAAGCAACCATTTTGTACAGCCTGGAACAGGGCAGAATAATTTAATACTTCCTTCTGTACGTCCCCCAACTTTGGGAAGTTTGTCTATTAGGCTTCCAAATCAGCCAGTAAATTCAACTGCAATGAACCAGCAAATGCATGGCTCGTTCCTTCAGCATCCAGTTCGTGTTGGAAGTTCAACTGTCTCACATAATGTTCCAATGGTTCGTCCAGATGCAAGCTTTCAGGCTGACCCCTCCGTGTCATCTGGTACTTCCCAGTTATTTAGTAAGGAAGGTGATAGATCTTCCAAAGCTCCTGAGGAATGGACCAAAAATAGTAGTAATTATTCAAACATGTCTGCGGGATTAGAGAATATAGGCATCACTCGTGATATTCCAGAATCCTTCACTCGCCCGGTAAAGCTCACTAGATTGAATGAGGGAAGGAAATCCTCTCTCGCATCTGGGACTTTAGACGTGCCTGTCTCCAACGGATCATCCCATGTTCCTGGAAGTAGTTTATTATCCGCACCTGCAGTTCCTAAATCAGAAGTGCGGCAACCTGACCAACAATCTTCACAGCTTCCATCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTAACACCGGAGCAATTGAGTTCCCTGCCACCAGAGCAGCAACAGCAGGTCATCCAACTCCAACAAGCTCTTAAGCGAGATCAGATGCAACCTGCATAA 1662 0.4555 MASSQAQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNKDQGRGGPGMTPVVDPQKQVGIPAVQGESPQAAPHQPIGLHFATTAAAVMTAALGGAQTGIQSNQNGLHNQSAFTNDPLTSHLAKMSRSQLTEIISEVKGMATHNKELSRQLLLSRPQLPKALFQAQIMLGMVTPSMLQMPNLRQVSDQTSQLKNEGHIGQTQQTLAQTVAGVPPYGQSKLQSGLTPYIQEGQANTLPHNPLASNQSTANPRPPLQPRIPLQHHPSNHFVQPGTGQNNLILPSVRPPTLGSLSIRLPNQPVNSTAMNQQMHGSFLQHPVRVGSSTVSHNVPMVRPDASFQADPSVSSGTSQLFSKEGDRSSKAPEEWTKNSSNYSNMSAGLENIGITRDIPESFTRPVKLTRLNEGRKSSLASGTLDVPVSNGSSHVPGSSLLSAPAVPKSEVRQPDQQSSQLPSDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALKRDQMQPA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02707 553 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Vifa3g02707 553 SUPERFAMILY RNA-binding domain, RBD 6 104 IPR035979 GO:0003676
Vifa3g02707 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Vifa3g02707 553 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 2 549 - -
Vifa3g02707 553 MobiDBLite consensus disorder prediction 460 509 - -
Vifa3g02707 553 MobiDBLite consensus disorder prediction 380 431 - -
Vifa3g02707 553 MobiDBLite consensus disorder prediction 321 338 - -
Vifa3g02707 553 CDD RRM_CSTF2_RNA15_like 9 85 - -
Vifa3g02707 553 FunFam Related to Cleavage stimulation factor 506 548 - -
Vifa3g02707 553 Pfam Transcription termination and cleavage factor C-terminal 515 547 IPR026896 GO:0031124
Vifa3g02707 553 Gene3D - 1 109 IPR012677 -
Vifa3g02707 553 MobiDBLite consensus disorder prediction 286 306 - -
Vifa3g02707 553 MobiDBLite consensus disorder prediction 286 338 - -
Vifa3g02707 553 SMART rrm1_1 10 83 IPR000504 GO:0003723
Vifa3g02707 553 MobiDBLite consensus disorder prediction 394 411 - -
Vifa3g02707 553 FunFam Cleavage stimulating factor 64 160 235 - -
Vifa3g02707 553 Gene3D - 509 552 IPR038192 -
Vifa3g02707 553 MobiDBLite consensus disorder prediction 84 110 - -
Vifa3g02707 553 FunFam Cleavage stimulating factor 64 2 118 - -
Vifa3g02707 553 Gene3D - 154 235 - -
Vifa3g02707 553 MobiDBLite consensus disorder prediction 460 485 - -
Vifa3g02707 553 Pfam Hinge domain of cleavage stimulation factor subunit 2 169 233 IPR025742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02707 Vifa-Chr3 750435296 750440034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02707 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.38e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02707 K14407 - gmx:100794399 716.072