Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02703 ATGGCAGAACTTCTCCACAATCCAAAAATAATGAAAAAAGCAACAAACGAAGTGACTCAAATAATCGGAAAATCCAACCAAGTCAAAGAAACTGACATTCCATCTCTTCCTTACATCCAATCAATAGTCAAAGAAACACTTCGCCTTCATCCACCAGTTCCACTTCTCTTACCTTACATTGCATCAAACGATGTCGAAATCAACGGTTACACAATTCACAGAGGAAACCAAGTTTTGATTAACGCTTGGTCTATTGGAAGAAACCCTGAGTTTTGGGATGATCCATTGGTTTTTAAGCCGGAGAGGTTTATTGATTCTAGTGTTGATTTTAAAGGTAGAGATTTTGAGTATTTACCTTTTGGTGCTGGGAGAAGAATTTGTCCTGGGATTCCTCTTGCTAATAGGATGATTGTTTTAATGTTGGCTGTTTTGTTGCATTCTTTTGAATGGGAGCTGCCTCAAGGTGTTGGTCCTGAAATGCTTGATATGAGGGAGCAATATGGAATCACGTTGAAGAAGCTTGTTCCTCTTTCTGCTGTTCCAATTTCTGTAGTTGTATGA 561 0.3868 MAELLHNPKIMKKATNEVTQIIGKSNQVKETDIPSLPYIQSIVKETLRLHPPVPLLLPYIASNDVEINGYTIHRGNQVLINAWSIGRNPEFWDDPLVFKPERFIDSSVDFKGRDFEYLPFGAGRRICPGIPLANRMIVLMLAVLLHSFEWELPQGVGPEMLDMREQYGITLKKLVPLSAVPISVVV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02703 186 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506|GO:0016705
Vifa3g02703 186 PRINTS E-class P450 group I signature 117 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g02703 186 PRINTS E-class P450 group I signature 127 150 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g02703 186 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g02703 186 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g02703 186 FunFam Predicted protein 1 179 - -
Vifa3g02703 186 Pfam Cytochrome P450 2 172 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g02703 186 SUPERFAMILY Cytochrome P450 1 179 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g02703 186 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 183 - -
Vifa3g02703 186 Gene3D Cytochrome P450 1 177 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g02703 186 PRINTS P450 superfamily signature 118 127 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g02703 186 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g02703 186 PRINTS P450 superfamily signature 127 138 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g02703 186 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02703 Vifa-Chr3 750239408 750239968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02703 1 182 Cytochrome P450 AT1G33720 53.846 5.05e-72 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02703 - - aip:107619366 291.197